Transcript 3959 | MetamORF

Transcript

ID CARD

MetamORF ID

3959

ENST00000414411

Name

DDB1-202

Strand

Biotype

retained_intron

Start-end positions

61313673-61315750

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTG ...

Genome browsers

UCSC

Gene

HGNC:2717

Aliases

DDB1,
ENSG00000167986, HGNC:2717, NCBI:1642,
OFF:DDB1

Chr 11

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3972	129	CTG ...	LMT ...	Ribo-seq	CTG	moderate	22	sORFs_org_Human	Intronic sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, RPE-1, THP-1
907811	198	CGT ...	RKK ...	Ribo-seq	CGT		2	sORFs_org_Human	Intronic sORF	HEK293, Jurkat
3965	69	GTG ...	VPW ...	Ribo-seq	GTG	weak	17	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
3985	201	GTG ...	VAC ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	HeLa
1316920	108	TTG ...	LKL ...	Ribo-seq	TTG		1	sORFs_org_Human	Intronic sORF	HEK293
3970	93	TTG ...	LRV ...	Ribo-seq	TTG	weak	21	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
3952	189	GTG ...	VTL ...	Ribo-seq	GTG		2	sORFs_org_Human	Intronic sORF	HEK293, Jurkat
3977	159	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HEK293
3979	192	TTG ...	LDI ...	Ribo-seq	TTG		1	sORFs_org_Human	Intronic sORF	HeLa
3961	57	ATG ...	MER ...	Ribo-seq	ATG	strong	13	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, HFF, LCL, THP-1
3958	39	TTG ...	LGS ...	Ribo-seq	TTG	strong	11	sORFs_org_Human	Intronic sORF	Brain, HAP1, HEK293, HeLa, hES, HFF, LCL
3963	87	TTG ...	LGD ...	Ribo-seq	TTG	strong	8	sORFs_org_Human	Intronic sORF	Brain, guo_2014, HEK293, hES, LCL
1316918	102	TTG ...	LPS ...	Ribo-seq	TTG		1	sORFs_org_Human	Intronic sORF	HEK293
907808	69	GGG ...	GHP ...	Ribo-seq	GGG		2	sORFs_org_Human	Intronic sORF	HEK293, Jurkat

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