Transcript 3533 | MetamORF

Transcript

ID CARD

MetamORF ID

3533

ENST00000529002

Name

SSRP1-204

Strand

Biotype

protein_coding

Start-end positions

57332835-57335873

CDS Start-stop positions

-57333489

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

HGNC:11327

Aliases

ENSG00000149136,
FACT80, HGNC:11327, NCBI:6749,
OFF:SSRP1, SSRP1

Chr 11

ORFs

33 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
482123	48	TTG ...	LRN ...	Ribo-seq	TTG	moderate	7	sORFs_org_Human	sORF	HEK293T, HeLa, hES, MDA-MB-231
634609	69	GTG ...	VTS ...	Ribo-seq	GTG	weak	14	sORFs_org_Human	sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1
3539	42	ATG ...	MAM ...	Ribo-seq	ATG		25	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
101953	156	CTG ...	LGH ...	Ribo-seq	CTG		4	sORFs_org_Human	sORF	guo_2014, HEK293, Jurkat
634607	54	TTG ...	LRY ...	Ribo-seq	TTG	weak	13	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
1008025	138	CTG ...	LLT ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	guo_2014
3541	66	ATG ...	MDL ...	Ribo-seq	ATG		28	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
3535	45	TTG ...	LCE ...	Ribo-seq	TTG		13	sORFs_org_Human	sORF	BJ, guo_2014, HEK293, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
3549	255	TTG ...	LSR ...	Ribo-seq	TTG		21	sORFs_org_Human	sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MM1S, RPE-1, U2OS
3551	261	CTG ...	LRL ...	Ribo-seq	CTG		23	sORFs_org_Human	sORF	BJ, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, MM1S, RPE-1, U2OS
907111	60	TTA ...	LNC ...	Ribo-seq	TTA		1	sORFs_org_Human	sORF	Jurkat
634611	72	TTG ...	LVT ...	Ribo-seq	TTG	strong	13	sORFs_org_Human	sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1
483602	126	TTG ...	LLW ...	Ribo-seq	TTG		10	sORFs_org_Human	sORF	Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231
3532	33	CTG ...	LEL ...	Ribo-seq	CTG		11	sORFs_org_Human	sORF	BJ, guo_2014, HEK293, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
3537	36	ATG ...	MST ...	Ribo-seq	ATG		26	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, Jurkat, MDA-MB-231, MM1S, RPE-1, THP-1
483600	114	ATG ...	MDL ...	Ribo-seq	ATG		9	sORFs_org_Human	sORF	Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231
407454	90	TCT ...	SGA ...	Ribo-seq	TCT		2	sORFs_org_Human	sORF	HCT116, Jurkat
1136861	36	CTG ...	LIS ...	Ribo-seq	CTG	weak	7	sORFs_org_Human	sORF	HEK293, HEK293T, HeLa, hES, MDA-MB-231
3547	210	GTG ...	VDN ...	Ribo-seq	GTG		16	sORFs_org_Human	sORF	Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF
407456	228	AAT ...	NSK ...	Ribo-seq	AAT		3	sORFs_org_Human	sORF	HCT116, HEK293, Jurkat
101948	81	ATG ...	MTQ ...	Ribo-seq	ATG		5	sORFs_org_Human	sORF	Blood, HEK293, HeLa, MDA-MB-231, THP-1
483598	90	ATG ...	MAM ...	Ribo-seq	ATG		8	sORFs_org_Human	sORF	HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231
285152	33	CTG ...	LAP ...	Ribo-seq	CTG	moderate	12	sORFs_org_Human	sORF	BJ, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, U2OS
907123	36	CCG ...	PGP ...	Ribo-seq	CCG		1	sORFs_org_Human	sORF	Jurkat
482121	78	TTG ...	LTL ...	Ribo-seq	TTG	weak	14	sORFs_org_Human	sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
3543	78	TTG ...	LLW ...	Ribo-seq	TTG		30	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, Jurkat, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
907104	93	TGT ...	CVV ...	Ribo-seq	TGT		1	sORFs_org_Human	sORF	Jurkat
483604	129	GTG ...	VLL ...	Ribo-seq	GTG		8	sORFs_org_Human	sORF	Blood, HEK293T, HeLa, hES, MDA-MB-231
483596	84	ATG ...	MST ...	Ribo-seq	ATG		7	sORFs_org_Human	sORF	HAP1, HEK293T, HeLa, hES, MDA-MB-231
916190	48	CCG ...	PGP ...	Ribo-seq	CCG		1	sORFs_org_Human	sORF	Jurkat
3200321	87	TGC ...	CFP ...	Ribo-seq	TGC	moderate	1	sORFs_org_Human	sORF	HEK293
3545	81	GTG ...	VLL ...	Ribo-seq	GTG		29	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
482119	36	ATG ...	MCP ...	Ribo-seq	ATG	moderate	13	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1

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