Transcript 3483 | MetamORF

Transcript

ID CARD

MetamORF ID

3483

ENST00000635721

Name

SSRP1-205

Strand

Biotype

protein_coding

Start-end positions

57326872-57330927

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

HGNC:11327

Aliases

ENSG00000149136,
FACT80, HGNC:11327, NCBI:6749,
OFF:SSRP1, SSRP1

Chr 11

ORFs

47 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3200304	123	TGC ...	CCG ...	Ribo-seq	TGC		1	sORFs_org_Human	sORF	HEK293
285129	126	CTG ...	LPA ...	Ribo-seq	CTG		16	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
483583	117	CTG ...	LPA ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF	HEK293, HEK293T, MDA-MB-231
2548373	213	ATG ...	MTA ...	Ribo-seq	ATG		1	sORFs_org_Human	sORF	HEK293
407435	51	GGA ...	GGR ...	Ribo-seq	GGA		1	sORFs_org_Human	sORF	HCT116
293871	186	GTG ...	VGS ...	Ribo-seq	GTG		5	sORFs_org_Human	sORF	HEK293, HEK293T, LCL
293869	153	CTG ...	LAC ...	Ribo-seq	CTG		17	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
285127	108	ATG ...	MRV ...	Ribo-seq	ATG		16	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
3489	132	CTG ...	LHT ...	Ribo-seq	CTG		17	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
3200298	84	TCC ...	SWH ...	Ribo-seq	TCC		1	sORFs_org_Human	sORF	HEK293
1724946	30	ATG ...	MPG ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human	sORF	Blood, HeLa, MDA-MB-231, RPE-1
3482	78	CTG ...	LAS ...	Ribo-seq	CTG		11	sORFs_org_Human	sORF	BJ, HAP1, HEK293, HeLa, hES, loayza_puch_2016, MDA-MB-231, RPE-1
3487	123	GTG ...	VAQ ...	Ribo-seq	GTG		17	sORFs_org_Human	sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1724960	42	TTG ...	LST ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	sORF	Blood, HEK293, HeLa, MDA-MB-231
3200308	69	CAG ...	QVK ...	Ribo-seq	CAG		1	sORFs_org_Human	sORF	HEK293
3200296	69	GCA ...	ASR ...	Ribo-seq	GCA		1	sORFs_org_Human	sORF	HEK293
2314247	48	ATG ...	MLT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	sORF	MDA-MB-231
482101	48	ATG ...	MPM ...	Ribo-seq	ATG		3	sORFs_org_Human	sORF	HEK293T, HeLa, MM1S
1505733	36	ATG ...	MRT ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	sORF	BJ, MDA-MB-231
2548375	219	ATG ...	MPM ...	Ribo-seq	ATG		1	sORFs_org_Human	sORF	HEK293
293867	141	CTG ...	LAG ...	Ribo-seq	CTG		19	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
293863	93	GTG ...	VTV ...	Ribo-seq	GTG		4	sORFs_org_Human	sORF	HEK293, LCL, MDA-MB-231
3200306	123	CCA ...	PAP ...	Ribo-seq	CCA		1	sORFs_org_Human	sORF	HEK293
483585	132	TTG ...	LTA ...	Ribo-seq	TTG		3	sORFs_org_Human	sORF	HEK293, HEK293T, MDA-MB-231
293861	87	GTG ...	VTG ...	Ribo-seq	GTG		5	sORFs_org_Human	sORF	HEK293, HEK293T, LCL, MDA-MB-231
285117	39	CTG ...	LEG ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF	BJ, LCL, MM1S
293865	99	ATG ...	MRV ...	Ribo-seq	ATG		4	sORFs_org_Human	sORF	HEK293, LCL, MDA-MB-231
293857	78	ATG ...	MRR ...	Ribo-seq	ATG		5	sORFs_org_Human	sORF	HEK293, HEK293T, LCL, MDA-MB-231
3200300	87	CAG ...	QTI ...	Ribo-seq	CAG		1	sORFs_org_Human	sORF	HEK293
285121	87	ATG ...	MRR ...	Ribo-seq	ATG		14	sORFs_org_Human	sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
482099	42	ATG ...	MTA ...	Ribo-seq	ATG		2	sORFs_org_Human	sORF	HEK293T, HeLa
2314243	39	CTG ...	LMR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	sORF	MDA-MB-231
3485	111	ATG ...	MPA ...	Ribo-seq	ATG		17	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
285131	141	TTG ...	LTA ...	Ribo-seq	TTG		17	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
1047464	84	ATG ...	MSH ...	Ribo-seq	ATG		1	sORFs_org_Human	sORF	HEK293
2314245	45	CTG ...	LTL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	sORF	MDA-MB-231
2548371	201	ATG ...	MTQ ...	Ribo-seq	ATG		1	sORFs_org_Human	sORF	HEK293
1632554	54	ATG ...	MNM ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	sORF	Flp-In_T-REx-293, HeLa, MDA-MB-231
483591	216	TTG ...	LDL ...	Ribo-seq	TTG		1	sORFs_org_Human	sORF	HEK293T
3491	153	ATG ...	MPP ...	Ribo-seq	ATG		11	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1
1820972	48	TTG ...	LIL ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	sORF	HEK293, HeLa, MDA-MB-231
8166	207	TTG ...	LGS ...	Ribo-seq	TTG		19	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
285125	102	GTG ...	VTV ...	Ribo-seq	GTG		16	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
1724948	36	CTG ...	LRM ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	sORF	Blood, HeLa, MDA-MB-231, RPE-1
285123	96	GTG ...	VTG ...	Ribo-seq	GTG		14	sORFs_org_Human	sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
3200302	114	TGC ...	CQP ...	Ribo-seq	TGC		1	sORFs_org_Human	sORF	HEK293
293873	210	TTG ...	LSS ...	Ribo-seq	TTG		3	sORFs_org_Human	sORF	HEK293, HEK293T, LCL

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