Transcript 3322181

Transcript

ID CARD

MetamORF ID

3322181

UNKNOWN_TRANSCRIPT

Name

Strand

Biotype

Start-end positions

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

Genome browsers

Gene

HGNC:6898

Aliases

CMT2U,
ENSG00000166986, HGNC:6898, MARS,
MetRS, NCBI:4141, OFF:MARS,
SPG70

Chr 12

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3322207	358	GCA ...	ATG ...	Ribo-seq	GCA		1	Erhard2018		HFF
3322201	1908	ATG ...	MAV ...	Ribo-seq	ATG		1	Erhard2018		HFF
3322189	423	ATG ...	MRL ...	Ribo-seq	ATG		1	Erhard2018		HFF
3322195	699	GTC ...	VVR ...	Ribo-seq	GTC		1	Erhard2018		HFF
3322213	2703	ATG ...	MRL ...	Ribo-seq	ATG		1	Erhard2018		HFF
3322192	345	ATG ...	MRL ...	Ribo-seq	ATG		1	Erhard2018		HFF
3322186	216	ATG ...	MRL ...	Ribo-seq	ATG		1	Erhard2018	sORF	HFF
301309	156	ATG ...	MRM ...	Predicted	ATG		1	Samandi2017	sORF
3322198	1641	ATG ...	MRL ...	Ribo-seq	ATG		1	Erhard2018		HFF
3322183	156	GTG ...	VQS ...	Ribo-seq	GTG		1	Erhard2018	sORF	HFF
3322204	246	GTG ...	VNI ...	Ribo-seq	GTG		1	Erhard2018	sORF	HFF
1742182	141	ATG ...	MSG ...	Predicted	ATG		1	Samandi2017	sORF
1742162	189	ATG ...	MCS ...	Predicted	ATG		1	Samandi2017	sORF
3322210	177	GGT ...	GFV ...	Ribo-seq	GGT		1	Erhard2018	sORF	HFF
1213105	162	ATG ...	MCL ...	Predicted	ATG		1	Samandi2017	sORF
2345233	258	ATG ...	MRR ...	Predicted	ATG		1	Samandi2017	sORF
3322180	333	ATG ...	MRL ...	Ribo-seq	ATG		1	Erhard2018		HFF

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