Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3322213
Chromosome
12
Strand
+
Start-stop positions
57488091-57516581
Nucleic length (bp)
2703
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MRL ...
Spliced: Yes
Exons
21
Exons start-end
57488091-57488199
57489019-57489109
57489267-57489345
57489424-57489558
57489896-57489971
57490207-57490379
57490538-57490644
57498157-57498273
57498420-57498623
57500321-57500522
57504225-57504299
57511698-57511868
57512008-57512103
57512236-57512353
57512751-57512964
57514720-57514851
57514954-57515058
57515150-57515336
57515920-57515991
57516245-57516337
57516435-57516581
Genome browsers
ID
Aliases
CMT2U
ENSG00000166986,
HGNC:6898,
MARS
MetRS,
NCBI:4141,
OFF:MARS
SPG70
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3322181 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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