Transcript 3314495

Transcript

ID CARD

MetamORF ID

3314495

UNKNOWN_TRANSCRIPT

Name

Strand

Biotype

Start-end positions

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

Genome browsers

Gene

HGNC:2717

Aliases

DDB1,
ENSG00000167986, HGNC:2717, NCBI:1642,
OFF:DDB1

Chr 11

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3314530	418	ATG ...	MYG ...	Ribo-seq	ATG		1	Erhard2018		HFF
3314509	801	ATG ...	MEH ...	Ribo-seq	ATG		1	Erhard2018		HFF
3314506	486	ATG ...	MSY ...	Ribo-seq	ATG		1	Erhard2018		HFF
3314521	763	ATG ...	MVI ...	Ribo-seq	ATG		1	Erhard2018		HFF
3314500	611	ATG ...	MVY ...	Ribo-seq	ATG		1	Erhard2018		HFF
3314518	910	ATG ...	MSE ...	Ribo-seq	ATG		1	Erhard2018		HFF
3314527	496	ATG ...	MYG ...	Ribo-seq	ATG		1	Erhard2018		HFF
3314533	438	ATG ...	MSY ...	Ribo-seq	ATG		1	Erhard2018		HFF
3314512	722	ATG ...	MLN ...	Ribo-seq	ATG		1	Erhard2018		HFF
3314524	546	ATG ...	MMT ...	Ribo-seq	ATG		1	Erhard2018		HFF
3314536	328	ATG ...	MSY ...	Ribo-seq	ATG		1	Erhard2018		HFF
8375	117	ATG ...	MWS ...	Predicted	ATG		1	Samandi2017	sORF
3841	57	TTG ...	LVF ...	Ribo-seq	TTG		1	Erhard2018	sORF	HFF
8307	267	ATG ...	MRP ...	Predicted	ATG		1	Samandi2017	sORF
8287	159	ATG ...	MMT ...	Predicted	ATG		1	Samandi2017	sORF
8342	141	ATG ...	MEL ...	Predicted	ATG		1	Samandi2017	sORF
3314494	3423	ATG ...	MSY ...	Ribo-seq	ATG		1	Erhard2018		HFF
8369	138	ATG ...	MPA ...	Predicted	ATG		1	Samandi2017	sORF
3314497	3279	ATG ...	MSY ...	Ribo-seq	ATG		1	Erhard2018		HFF
294209	186	ATG ...	MVT ...	Predicted	ATG		1	Samandi2017	sORF
3314515	816	ATG ...	MET ...	Ribo-seq	ATG		1	Erhard2018		HFF

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