Transcript 3312179

Transcript

ID CARD

MetamORF ID

3312179

UNKNOWN_TRANSCRIPT

Name

Strand

Biotype

Start-end positions

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

Genome browsers

Gene

HGNC:8068

Aliases

ENSG00000110713,
HGNC:8068, NCBI:4928, NUP96,
NUP98, OFF:NUP98

Chr 11

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3312181	4917	ATG ...	MFN ...	Ribo-seq	ATG		1	Erhard2018		HFF
293394	228	ATG ...	MPL ...	Predicted	ATG		1	Samandi2017	sORF
2326685	102	ATG ...	MTL ...	Predicted	ATG		1	Samandi2017	sORF
3312190	2814	ATG ...	MFN ...	Ribo-seq	ATG		1	Erhard2018		HFF
1731173	114	ATG ...	MWM ...	Predicted	ATG		1	Samandi2017	sORF
1208215	171	ATG ...	MKE ...	Predicted	ATG		1	Samandi2017	sORF
1204537	150	ATG ...	MRI ...	Predicted	ATG		1	Samandi2017	sORF
1208220	171	ATG ...	MVR ...	Predicted	ATG		1	Samandi2017	sORF
3312193	705	TGG ...	WKQ ...	Ribo-seq	TGG		1	Erhard2018		HFF
3312184	698	CAG ...	QSG ...	Ribo-seq	CAG		1	Erhard2018		HFF
2299	108	ATG ...	MSY ...	Predicted	ATG		1	Samandi2017	sORF
3312196	536	AGA ...	RPI ...	Ribo-seq	AGA		1	Erhard2018		HFF
3312202	372	ATG ...	MFN ...	Ribo-seq	ATG		1	Erhard2018		HFF
3312199	409	CCT ...	PLQ ...	Ribo-seq	CCT		1	Erhard2018		HFF
3312187	226	CTA ...	LWQ ...	Ribo-seq	CTA		1	Erhard2018	sORF	HFF
2681574	60	GTG ...	VAG ...	Ribo-seq	GTG		1	Erhard2018	sORF	HFF
3312178	5403	ATG ...	MFN ...	Ribo-seq	ATG		1	Erhard2018		HFF

Export data