Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3312190
Chromosome
11
Strand
-
Start-stop positions
3712543-3782117
Nucleic length (bp)
2814
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MFN ...
Spliced: Yes
Exons
19
Exons start-end
3782117-3782042
3779257-3779156
3779049-3778873
3776021-3775882
3773739-3773632
3771928-3771748
3768744-3768581
3763039-3762902
3760626-3760488
3753408-3753316
3744649-3744509
3735324-3735191
3731578-3731391
3725219-3725103
3723455-3723157
3720825-3720712
3719550-3719412
3713995-3713818
3712728-3712543
Genome browsers
ID
Aliases
ENSG00000110713
HGNC:8068,
NCBI:4928,
NUP96
NUP98,
OFF:NUP98
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3312179 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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