Metam
ORF

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Transcript

ID CARD

MetamORF ID

3299276

ID

UNKNOWN_TRANSCRIPT

Name

Strand

Biotype

Start-end positions

-

CDS Start-stop positions

-

CDS Relative positions

-

Sequences

Transcript sequence

Gene

ID

HGNC:24236

Aliases

CARP-1,
CARP1, CCAR1, ENSG00000060339,
FLJ10590, HGNC:24236, NCBI:55749,
OFF:CCAR1


Chr 10

ORFs

16 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

3299302 869

GTC ...

V*T ...

Ribo-seq
GTC 1 Erhard2018

HFF
274763 111

ATG ...

MGG ...

Predicted
ATG 1 Samandi2017
    sORF
1315041 117

ATG ...

MWR ...

Predicted
ATG 1 Samandi2017
    sORF
3299296 2316

ATG ...

MAQ ...

Ribo-seq
ATG 1 Erhard2018

HFF
3299305 3130

ATG ...

MAQ ...

Ribo-seq
ATG 1 Erhard2018

HFF
3299284 255

ATG ...

MAQ ...

Ribo-seq
ATG 1 Erhard2018
    sORF
HFF
3299287 513

ATG ...

MAQ ...

Ribo-seq
ATG 1 Erhard2018

HFF
3299299 1939

ATG ...

MPF ...

Ribo-seq
ATG 1 Erhard2018

HFF
3299278 285

ATG ...

MAT ...

Ribo-seq
ATG 1 Erhard2018
    sORF
HFF
3299290 146

AGA ...

RLL ...

Ribo-seq
AGA 1 Erhard2018
    sORF
HFF
1402510 108

ATG ...

MWR ...

Predicted
ATG 1 Samandi2017
    sORF
3299308 3453

ATG ...

MAQ ...

Ribo-seq
ATG 1 Erhard2018

HFF
99865 45

ATG ...

MAS ...

Ribo-seq
ATG 1 Erhard2018
    sORF
HFF
1210 201

ATG ...

MTE ...

Predicted
ATG 1 Samandi2017
    sORF
3299293 1707

ATG ...

MAQ ...

Ribo-seq
ATG 1 Erhard2018

HFF
3299281 357

ATG ...

MAQ ...

Ribo-seq
ATG 1 Erhard2018

HFF

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

B_cell

BJ

Blood

Brain

Brain_tumor

Breast

Flp-In_T-REx-293

guo_2014

HAP1

HCT116

HEK293

HEK293T

HeLa

hES

HFF

Jurkat

LCL

loayza_puch_2016

MDA-MB-231

MM1S

Monocyte

NCCIT

RPE-1

Skeletal_muscle

THP-1

U2OS