Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3299305
Chromosome
10
Strand
+
Start-stop positions
68722505-68788316
Nucleic length (bp)
3130
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MAQ ...
Spliced: Yes
Exons
21
Exons start-end
68722505-68722577
68736876-68737048
68740629-68740661
68742376-68742569
68747161-68747275
68747374-68747566
68749136-68749265
68749524-68749685
68753852-68754077
68754714-68754827
68755370-68755536
68756273-68756483
68757294-68757377
68761007-68761192
68765888-68766079
68771206-68771445
68772988-68773099
68786136-68786218
68786546-68786692
68787927-68788047
68788143-68788316
Genome browsers
ID
Aliases
CARP-1
CARP1,
CCAR1,
ENSG00000060339
FLJ10590,
HGNC:24236,
NCBI:55749
OFF:CCAR1
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3299276 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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