Transcript 296910

Transcript

ID CARD

MetamORF ID

296910

ENST00000644132

Name

Strand

Biotype

protein_coding

Start-end positions

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

Genome browsers

Gene

HGNC:1919

Aliases

CHD4,
ENSG00000111642, HGNC:1919, Mi-2b,
Mi2-BETA, NCBI:1108, OFF:CHD4

Chr 12

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
484290	126	GTG ...	VTR ...	Ribo-seq	GTG		15	sORFs_org_Human	sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
918962	45	GGA ...	GCT ...	Ribo-seq	GGA		1	sORFs_org_Human	sORF	Jurkat
918960	66	AGA ...	RGP ...	Ribo-seq	AGA		1	sORFs_org_Human	sORF	Jurkat
535984	216	GTG ...	VWG ...	Ribo-seq	GTG		2	sORFs_org_Human	sORF	guo_2014, U2OS
296909	30	GTG ...	VRR ...	Ribo-seq	GTG		14	sORFs_org_Human	sORF	BJ, guo_2014, HEK293, HeLa, LCL, loayza_puch_2016, MM1S, RPE-1, U2OS
535978	177	GTG ...	VFL ...	Ribo-seq	GTG		7	sORFs_org_Human	sORF	BJ, guo_2014, HEK293, HeLa, THP-1, U2OS
296912	93	CTG ...	LAG ...	Ribo-seq	CTG		14	sORFs_org_Human	sORF	BJ, guo_2014, HAP1, HEK293, HeLa, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
918956	30	TCC ...	SKA ...	Ribo-seq	TCC		1	sORFs_org_Human	sORF	Jurkat
484292	153	CTG ...	LCF ...	Ribo-seq	CTG		9	sORFs_org_Human	sORF	BJ, guo_2014, HEK293, HEK293T, HeLa, RPE-1, THP-1, U2OS
484294	162	CTG ...	LTV ...	Ribo-seq	CTG		6	sORFs_org_Human	sORF	BJ, guo_2014, HEK293, HEK293T, HeLa, U2OS
918964	120	GCC ...	AGR ...	Ribo-seq	GCC		1	sORFs_org_Human	sORF	Jurkat
535982	198	GTG ...	VRV ...	Ribo-seq	GTG		3	sORFs_org_Human	sORF	guo_2014, HeLa, U2OS
918958	102	ATT ...	ICQ ...	Ribo-seq	ATT		1	sORFs_org_Human	sORF	Jurkat
1010709	219	CTG ...	LGW ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	guo_2014

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