Transcript 294937

Transcript

ID CARD

MetamORF ID

294937

ENST00000322535

Name

SF3B2-201

Strand

Biotype

protein_coding

Start-end positions

66052336-66068911

CDS Start-stop positions

66052385-66068745

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

HGNC:10769

Aliases

Cus1,
ENSG00000087365, HGNC:10769, NCBI:10992,
OFF:SF3B2, SAP145, SF3b1,
SF3b145, SF3B2

Chr 11

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
483896	63	ATG ...	MTS ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293T, hES, MDA-MB-231
1049705	81	CTG ...	LKN ...	Ribo-seq	CTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, MDA-MB-231, MM1S, Monocyte, RPE-1
294941	144	TTG ...	LTN ...	Ribo-seq	TTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, U2OS
3201237	225	CAG ...	QML ...	Ribo-seq	CAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
483884	72	CTG ...	LKF ...	Ribo-seq	CTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Flp-In_T-REx-293, HEK293, HEK293T, MDA-MB-231, MM1S, Monocyte, RPE-1
409725	84	ACA ...	TVM ...	Ribo-seq	ACA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
1094868	159	CTG ...	LCL ...	Ribo-seq	CTG		6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HFF, MDA-MB-231, RPE-1
294939	186	CTG ...	LRR ...	Ribo-seq	CTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
294943	126	CTG ...	LQP ...	Ribo-seq	CTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Flp-In_T-REx-293, HEK293, HEK293T, hES, LCL, MDA-MB-231, U2OS
3201239	213	CGT ...	RPW ...	Ribo-seq	CGT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
294945	102	TTG ...	LKR ...	Ribo-seq	TTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Flp-In_T-REx-293, HEK293, HEK293T, hES, LCL, MDA-MB-231, U2OS
409723	153	CAG ...	QRN ...	Ribo-seq	CAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
482704	63	TTG ...	LTS ...	Ribo-seq	TTG	moderate	11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1
294947	81	GTG ...	VMM ...	Ribo-seq	GTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293T, hES, LCL, MDA-MB-231
3201241	198	CAG ...	QRQ ...	Ribo-seq	CAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
294936	222	ATG ...	MLA ...	Ribo-seq	ATG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
482710	36	ATG ...	MPS ...	Ribo-seq	ATG	moderate	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
483890	78	ATG ...	MMT ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293T, hES, MDA-MB-231
1094870	153	CTG ...	LCH ...	Ribo-seq	CTG		7	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HFF, MDA-MB-231, RPE-1
294949	99	TTG ...	LRS ...	Ribo-seq	TTG		5	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, hES, LCL, MDA-MB-231
483894	66	GTG ...	VMT ...	Ribo-seq	GTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293T, hES, MDA-MB-231
483886	30	TTG ...	LRL ...	Ribo-seq	TTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293T, HeLa, MDA-MB-231, MM1S, RPE-1
482706	39	ATG ...	MMP ...	Ribo-seq	ATG	weak	9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
530153	48	GTG ...	VAD ...	Ribo-seq	GTG	moderate	6	sORFs_org_Human	InCDS Overlapping sORF	Flp-In_T-REx-293, HEK293, HEK293T, HeLa, MDA-MB-231, U2OS
483892	75	ATG ...	MTA ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293T, hES, MDA-MB-231

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