Transcript 287868

Transcript

ID CARD

MetamORF ID

287868

ENST00000530322

Name

SF3B2-209

Strand

Biotype

protein_coding

Start-end positions

66052400-66059044

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCC ...

Genome browsers

UCSC

Gene

HGNC:10769

Aliases

Cus1,
ENSG00000087365, HGNC:10769, NCBI:10992,
OFF:SF3B2, SAP145, SF3b1,
SF3b145, SF3B2

Chr 11

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
916655	114	GAA ...	EDP ...	Ribo-seq	GAA		1	sORFs_org_Human	sORF	Jurkat
916657	96	GGA ...	GEP ...	Ribo-seq	GGA		1	sORFs_org_Human	sORF	Jurkat
287867	111	CTG ...	LLQ ...	Ribo-seq	CTG		6	sORFs_org_Human	sORF	Blood, HEK293, LCL, MDA-MB-231, U2OS
3201235	123	GGC ...	GFG ...	Ribo-seq	GGC		1	sORFs_org_Human	sORF	HEK293
909946	75	GGG ...	GHP ...	Ribo-seq	GGG		1	sORFs_org_Human	sORF	Jurkat
916653	126	CCA ...	PGF ...	Ribo-seq	CCA		1	sORFs_org_Human	sORF	Jurkat
482683	153	CTG ...	LCY ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	HEK293T, HeLa
909942	117	TGT ...	CVT ...	Ribo-seq	TGT		1	sORFs_org_Human	sORF	Jurkat
909944	102	GGA ...	GTT ...	Ribo-seq	GGA		1	sORFs_org_Human	sORF	Jurkat
1732415	60	CTG ...	LGC ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	Blood, MDA-MB-231
1726942	60	CTG ...	LGC ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF	Blood, HEK293, MDA-MB-231
909948	48	AGA ...	RHG ...	Ribo-seq	AGA		2	sORFs_org_Human	sORF	HEK293, Jurkat

Export data