Transcript 280909

Transcript

ID CARD

MetamORF ID

280909

ENST00000339365

Name

SEC24C-201

Strand

Biotype

protein_coding

Start-end positions

73744391-73772161

CDS Start-stop positions

73746833-73771095

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

HGNC:10705

Aliases

ENSG00000176986,
HGNC:10705, KIAA0079, NCBI:9632,
OFF:SEC24C, SEC24C

Chr 10

ORFs

35 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1203949	153	TTG ...	LAV ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, MDA-MB-231
280923	90	CTG ...	LFV ...	Ribo-seq	CTG		7	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231, U2OS
1721513	162	CTG ...	LTC ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1
1721539	57	GTG ...	VLS ...	Ribo-seq	GTG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
280917	153	TTG ...	LCH ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
280929	30	GTG ...	VLA ...	Ribo-seq	GTG		4	sORFs_org_Human	InCDS Overlapping sORF	HAP1, HEK293, LCL, MDA-MB-231
1203952	102	ATG ...	MWM ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, MDA-MB-231
280927	63	GTG ...	VPR ...	Ribo-seq	GTG		7	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231, U2OS
1721530	90	ATG ...	MKR ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
1721541	54	TTG ...	LSR ...	Ribo-seq	TTG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
481358	42	ATG ...	MLP ...	Ribo-seq	ATG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, MDA-MB-231
280919	120	CTG ...	LWS ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, LCL, MDA-MB-231, U2OS
3069347	72	TTG ...	LTL ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative sORF Upstream	MM1S
280933	33	ATG ...	MSS ...	Ribo-seq	ATG		3	sORFs_org_Human	InCDS Overlapping sORF	BJ, HeLa, LCL
2680525	123	TTG ...	LTL ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative sORF Upstream	RPE-1
1203954	96	ATG ...	MWP ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, MDA-MB-231
280915	168	ATG ...	MWL ...	Ribo-seq	ATG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
1816496	42	CTG ...	LSE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
1203958	78	TTG ...	LCP ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, MDA-MB-231
1721516	138	ATG ...	MAS ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231, RPE-1
280913	171	CTG ...	LMW ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
1721506	183	ATG ...	MEA ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
1721535	126	ATG ...	MGI ...	Ribo-seq	ATG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
1721518	117	ATG ...	MSL ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231, RPE-1
1816494	30	GTG ...	VDR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1203960	63	CTG ...	LVA ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, MDA-MB-231
280921	105	ATG ...	MTI ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL, MDA-MB-231, U2OS
280911	177	TTG ...	LCL ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
1203956	81	CTG ...	LLC ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, MDA-MB-231
1721537	102	ATG ...	MGS ...	Ribo-seq	ATG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
280908	141	CTG ...	LGL ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, LCL, MDA-MB-231
280925	84	GTG ...	VTR ...	Ribo-seq	GTG		8	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231, THP-1, U2OS
1203962	60	GTG ...	VAL ...	Ribo-seq	GTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, MDA-MB-231
1203964	54	CTG ...	LST ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, MDA-MB-231
280931	42	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	LCL

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