Transcript 275744

Transcript

ID CARD

MetamORF ID

275744

ENST00000372371

Name

POLR3A-201

Strand

Biotype

protein_coding

Start-end positions

77975149-78029545

CDS Start-stop positions

77977478-78029407

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

HGNC:30074

Aliases

ENSG00000148606,
HGNC:30074, hRPC155, NCBI:11128,
OFF:POLR3A, POLR3A, RPC1,
RPC155

Chr 10

ORFs

45 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
281065	75	ATG ...	MAS ...	Ribo-seq	ATG		2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, LCL
275760	54	GTG ...	VRR ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL
2538367	39	CTG ...	LRR ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
1718431	33	ATG ...	MAS ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
896668	36	ACA ...	TCP ...	Ribo-seq	ACA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
896666	36	CGT ...	RKE ...	Ribo-seq	CGT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
281061	75	ATG ...	MRW ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
275743	42	GTG ...	VCC ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
1721618	45	ATG ...	MLL ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
2299075	51	ATG ...	MSV ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
3303181	4173	ATG ...	MVK ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
275741	51	ATG ...	MTA ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
275754	51	CTG ...	LAE ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	LCL, MDA-MB-231
2299090	123	ATG ...	MRN ...	Ribo-seq	ATG		2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
2542168	90	ATG ...	MNL ...	Ribo-seq	ATG		2	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
2091672	45	GTG ...	VDQ ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
2308063	36	ATG ...	MIP ...	Ribo-seq	ATG		2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
896670	81	GGT ...	GEG ...	Ribo-seq	GGT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2308069	66	TTG ...	LKQ ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
2542176	90	TTG ...	LYQ ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
281071	60	CTG ...	LTS ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, LCL
896674	186	TGT ...	CVS ...	Ribo-seq	TGT		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
2542178	99	ATG ...	MPP ...	Ribo-seq	ATG		2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
2538349	69	GTG ...	VSS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
1502802	36	CTG ...	LAA ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa
2299080	48	ATG ...	MEM ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
2538364	42	ATG ...	MPP ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
275758	36	GTG ...	VKP ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL
1718452	120	CTG ...	LQN ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1718456	30	GTG ...	VAE ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Alternative sORF Upstream	Blood
275756	60	TTG ...	LKQ ...	Ribo-seq	TTG		2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, LCL
896672	48	GGC ...	GLP ...	Ribo-seq	GGC	weak	1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
1718433	63	CTG ...	LRR ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1718448	108	CTG ...	LPH ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
2538358	84	TTG ...	LYQ ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
1718450	111	CTG ...	LLP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
2538353	39	CTG ...	LGF ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
2299067	30	ATG ...	MTT ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
2538351	87	GTG ...	VPS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
2299092	42	GTG ...	VPE ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2538355	48	TTG ...	LNI ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
2308071	129	ATG ...	MRN ...	Ribo-seq	ATG		2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
1718454	39	ATG ...	MGI ...	Ribo-seq	ATG	strong	4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
2542173	54	TTG ...	LNI ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
2538341	39	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293

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