Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3303181
Chromosome
10
Strand
-
Start-stop positions
77977478-78029407
Nucleic length (bp)
4173
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MVK ...
Spliced: Yes
Exons
31
Exons start-end
78029407-78029364
78026229-78026094
78025759-78025622
78025142-78024971
78024703-78024549
78022384-78022145
78022022-78021860
78021682-78021546
78019265-78019162
78017716-78017575
78013790-78013650
78010540-78010471
78009991-78009864
78009675-78009537
78007866-78007702
78004888-78004716
78002308-78002197
78001094-78000976
78000118-77999981
77993367-77993197
77991167-77991054
77986159-77986073
77985985-77985903
77985340-77985170
77984298-77984205
77984012-77983920
77982817-77982653
77982318-77982154
77981559-77981428
77980273-77980141
77977626-77977478
Genome browsers
Transcripts
1 known transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Gene ID
The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes. |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 275744 | ENST00000372371 | protein_coding | HGNC:30074 | - |
Ribo-seq |
1 |
Johnstone2016
|
|
Brain_tumor,
HEK293, HeLa, HFF |
||
| 3303182 | UNKNOWN_TRANSCRIPT | HGNC:30074 | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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