Transcript 2743 | MetamORF

Transcript

ID CARD

MetamORF ID

2743

ENST00000555531

Name

AC018523.2-201

Strand

Biotype

nonsense_mediated_decay

Start-end positions

14493783-14520344

CDS Start-stop positions

14510943-14520299

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

AC018523.2

Aliases

AC018523.2

Chr 11

ORFs

78 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
406866	156	TAT ...	YDD ...	Ribo-seq	TAT		1	sORFs_org_Human	Alternative Downstream NMD sORF	HCT116
101181	102	ATG ...	MMM ...	Ribo-seq	ATG		8	sORFs_org_Human	Downstream NMD sORF	Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, MM1S
283495	69	CTG ...	LLS ...	Ribo-seq	CTG		7	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, HeLa, LCL, MM1S
3200038	54	ATT ...	IPD ...	Ribo-seq	ATT	weak	1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293
1316155	120	CTG ...	LEA ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative NMD Overlapping sORF Upstream	HEK293, HeLa
2755	30	TTG ...	LVS ...	Ribo-seq	TTG		18	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
904749	45	GGA ...	GDH ...	Ribo-seq	GGA		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
101204	42	CTG ...	LML ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293, HeLa, LCL, MM1S
1316157	123	TTG ...	LLE ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative NMD Overlapping sORF Upstream	HEK293, HeLa
2742	132	TTG ...	LVK ...	Ribo-seq	TTG		21	sORFs_org_Human	Downstream NMD sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MM1S, RPE-1, U2OS
904771	297	AAA ...	KSK ...	Ribo-seq	AAA		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
101215	174	TTG ...	LSL ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293, HeLa
406885	267	TTG ...	LKV ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HCT116, Jurkat
406868	129	GTA ...	VKT ...	Ribo-seq	GTA		2	sORFs_org_Human	Downstream NMD sORF	HCT116, Jurkat
3015976	33	CTG ...	LCM ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	MM1S
283520	30	ATG ...	MMS ...	Ribo-seq	ATG		30	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
406878	63	TCT ...	SQL ...	Ribo-seq	TCT		2	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HCT116, Jurkat
904737	54	TCC ...	SCR ...	Ribo-seq	TCC		2	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, Jurkat
101195	141	TTG ...	LTA ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293, HeLa, MM1S
101183	105	ATG ...	MMM ...	Ribo-seq	ATG		9	sORFs_org_Human	Downstream NMD sORF	Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, MM1S
2779	141	ATG ...	MSL ...	Ribo-seq	ATG		19	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Blood, HEK293, HeLa, hES, HFF, LCL, MM1S, RPE-1, THP-1
101202	39	ATG ...	MLD ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293, HeLa, LCL, MM1S
2311788	45	GTG ...	VIQ ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	MDA-MB-231
101179	99	ATG ...	MMM ...	Ribo-seq	ATG		9	sORFs_org_Human	Downstream NMD sORF	Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, MM1S
101185	171	TTG ...	LEF ...	Ribo-seq	TTG		8	sORFs_org_Human	Alternative Downstream NMD sORF	guo_2014, HEK293, HeLa
2753	39	TTG ...	LER ...	Ribo-seq	TTG		32	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
406887	282	GCA ...	AVL ...	Ribo-seq	GCA		3	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HCT116, HEK293, Jurkat
904765	105	CTC ...	LIR ...	Ribo-seq	CTC		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
406873	51	GCT ...	ART ...	Ribo-seq	GCT		2	sORFs_org_Human	InCDS NMD Overlapping sORF	HCT116, Jurkat
406883	63	GTT ...	VDN ...	Ribo-seq	GTT		3	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HCT116, HEK293, Jurkat
904747	33	ATA ...	IWC ...	Ribo-seq	ATA		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
904758	30	CTT ...	LTA ...	Ribo-seq	CTT		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
101199	153	CTG ...	LLT ...	Ribo-seq	CTG		8	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293, HeLa, MM1S
2777	111	TTG ...	LQL ...	Ribo-seq	TTG		23	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, LCL, MM1S, RPE-1, THP-1, U2OS
904767	99	TCA ...	SEL ...	Ribo-seq	TCA		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
2767	30	GTG ...	VFG ...	Ribo-seq	GTG	moderate	19	sORFs_org_Human	InCDS NMD Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1723559	42	ATG ...	MSS ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Blood, MM1S, RPE-1
2765	117	TTG ...	LDS ...	Ribo-seq	TTG		7	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Brain, HEK293, HeLa
2757	33	GTG ...	VLV ...	Ribo-seq	GTG		13	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, THP-1
2773	81	TTG ...	LTT ...	Ribo-seq	TTG		25	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S, RPE-1, THP-1
1819607	135	CTG ...	LMT ...	Ribo-seq	CTG		1	sORFs_org_Human	Downstream NMD sORF	HeLa
2759	36	ATG ...	MVL ...	Ribo-seq	ATG		8	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293, HeLa, hES, MDA-MB-231, RPE-1
3200034	45	ACA ...	TGP ...	Ribo-seq	ACA		1	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293
904745	180	GCC ...	ALT ...	Ribo-seq	GCC		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
904735	195	TCC ...	SIG ...	Ribo-seq	TCC		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
1439449	87	CTG ...	LPV ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HeLa
2745	135	TTG ...	LLV ...	Ribo-seq	TTG		24	sORFs_org_Human	Downstream NMD sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HCT116, HEK293, HeLa, hES, HFF, Jurkat, LCL, MM1S, RPE-1, U2OS
904743	165	AAA ...	KPV ...	Ribo-seq	AAA		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
1439440	141	GTG ...	VSP ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative Downstream NMD sORF	HeLa
1819605	132	ATG ...	MTI ...	Ribo-seq	ATG		1	sORFs_org_Human	Downstream NMD sORF	HeLa
101206	45	CTG ...	LLM ...	Ribo-seq	CTG		9	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HCT116, HEK293, HeLa, Jurkat, LCL, MM1S
2749	150	ATG ...	MFP ...	Ribo-seq	ATG		24	sORFs_org_Human	Downstream NMD sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MM1S, RPE-1, U2OS
904741	60	TCC ...	SQS ...	Ribo-seq	TCC		1	sORFs_org_Human	InCDS NMD Overlapping sORF	Jurkat
101177	96	ATG ...	MMC ...	Ribo-seq	ATG		8	sORFs_org_Human	Downstream NMD sORF	Flp-In_T-REx-293, HAP1, HEK293, hES, MM1S
2771	69	TTG ...	LVS ...	Ribo-seq	TTG		25	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Flp-In_T-REx-293, guo_2014, HCT116, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, MM1S, RPE-1, THP-1, U2OS
2775	84	ATG ...	MLT ...	Ribo-seq	ATG		25	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S, RPE-1, THP-1
3015978	36	GTG ...	VLC ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	MM1S
527120	69	CTG ...	LQS ...	Ribo-seq	CTG	weak	8	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Blood, guo_2014, HeLa, loayza_puch_2016, MDA-MB-231, Monocyte, U2OS
283522	36	ATG ...	MTM ...	Ribo-seq	ATG		32	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
904731	114	TTA ...	LQS ...	Ribo-seq	TTA		2	sORFs_org_Human	Downstream NMD sORF	HEK293, Jurkat
101191	207	ATG ...	MYF ...	Ribo-seq	ATG		3	sORFs_org_Human	Downstream NMD sORF	HEK293
406871	63	AGA ...	RDA ...	Ribo-seq	AGA		2	sORFs_org_Human	Alternative Downstream NMD sORF	HCT116, Jurkat
904762	57	AAC ...	NHI ...	Ribo-seq	AAC		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
904755	66	TAC ...	YQH ...	Ribo-seq	TAC		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
101175	93	ATG ...	MCL ...	Ribo-seq	ATG		7	sORFs_org_Human	Downstream NMD sORF	Flp-In_T-REx-293, HAP1, HEK293, hES
2903798	120	TTG ...	LEP ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HeLa
2769	57	TTG ...	LRG ...	Ribo-seq	TTG		12	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S, THP-1
904751	45	TGG ...	WPE ...	Ribo-seq	TGG		3	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HeLa, Jurkat, THP-1
2311792	90	GTG ...	VPR ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	MDA-MB-231
2747	141	TTG ...	LEL ...	Ribo-seq	TTG		21	sORFs_org_Human	Downstream NMD sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MM1S, RPE-1, U2OS
904753	54	GAT ...	DMA ...	Ribo-seq	GAT		2	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293, Jurkat
2311790	78	ATG ...	MRA ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	MDA-MB-231
1723561	30	ATG ...	MTS ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Blood, hES, MDA-MB-231
2763	45	TTG ...	LYS ...	Ribo-seq	TTG	moderate	11	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231
406875	90	CCA ...	PTQ ...	Ribo-seq	CCA		1	sORFs_org_Human	InCDS NMD Overlapping sORF	HCT116
2751	84	CTG ...	LRA ...	Ribo-seq	CTG		28	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1
2761	51	ATG ...	MAG ...	Ribo-seq	ATG		21	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1819609	42	ATG ...	MYY ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative Downstream NMD sORF	HeLa

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