Transcript 2724 | MetamORF

Transcript

ID CARD

MetamORF ID

2724

ENST00000439561

Name

COPB1-202

Strand

Biotype

protein_coding

Start-end positions

14457550-14499895

CDS Start-stop positions

14457824-14498928

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

HGNC:2231

Aliases

COPB,
COPB1, ENSG00000129083, HGNC:2231,
NCBI:1315, OFF:COPB1

Chr 11

ORFs

64 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2311749	75	ATG ...	MLI ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1504701	120	GTG ...	VAL ...	Ribo-seq	GTG	strong	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, MDA-MB-231, RPE-1
7772	156	TTG ...	LQF ...	Ribo-seq	TTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
1819594	42	CTG ...	LRS ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
283464	60	ATG ...	MMM ...	Ribo-seq	ATG	weak	5	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231
1723463	48	CTG ...	LWL ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
7770	126	GTG ...	VTE ...	Ribo-seq	GTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231
292878	66	CTG ...	LQL ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, LCL, MDA-MB-231
1723481	36	ATG ...	MQT ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
633928	42	ATG ...	MST ...	Ribo-seq	ATG	weak	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231, THP-1
1723475	60	ATG ...	MQK ...	Ribo-seq	ATG	weak	4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
915688	30	GGC ...	GHK ...	Ribo-seq	GGC		1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
1723468	36	ATG ...	MTS ...	Ribo-seq	ATG	weak	3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
3313036	2862	ATG ...	MTA ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
633938	30	ATG ...	MFG ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1730770	81	ATG ...	MLE ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
292893	141	TTG ...	LQT ...	Ribo-seq	TTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1094460	78	GTG ...	VKM ...	Ribo-seq	GTG	weak	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, hES, MDA-MB-231, RPE-1
527096	51	TTG ...	LRS ...	Ribo-seq	TTG	moderate	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, hES, MDA-MB-231, RPE-1, U2OS
1723523	39	ATG ...	MRR ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
483444	45	CTG ...	LSD ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293T, MDA-MB-231
915674	93	ACA ...	TST ...	Ribo-seq	ACA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
292895	150	TTG ...	LVA ...	Ribo-seq	TTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
292898	39	CTG ...	LRS ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
1723470	45	TTG ...	LLL ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1504699	96	ATG ...	MLV ...	Ribo-seq	ATG	weak	6	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
1504703	129	CTG ...	LVT ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, MDA-MB-231, RPE-1
637926	39	CTG ...	LVV ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative sORF Upstream	HEK293, MDA-MB-231, RPE-1, THP-1
283459	30	ATG ...	MIL ...	Ribo-seq	ATG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
1094458	72	ATG ...	MHL ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, hES, MDA-MB-231, RPE-1
1723483	60	ATG ...	MTF ...	Ribo-seq	ATG	weak	3	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
1723504	48	ATG ...	MSW ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
283462	57	ATG ...	MMW ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HeLa, LCL, MDA-MB-231
292876	54	CTG ...	LMQ ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
1723477	66	CTG ...	LYM ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231
483440	111	TTG ...	LRR ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293T, HeLa, MDA-MB-231
1441622	33	GTG ...	VGH ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative sORF Upstream	HeLa, MDA-MB-231, RPE-1
1723491	135	TTG ...	LLR ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
483429	54	GTG ...	VPL ...	Ribo-seq	GTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293T, MDA-MB-231
292874	51	ATG ...	MQN ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, LCL, MDA-MB-231
101159	30	TTG ...	LHI ...	Ribo-seq	TTG		12	sORFs_org_Human	InCDS Overlapping sORF	Blood, Brain, HEK293, HeLa, hES, LCL, MDA-MB-231, Monocyte, U2OS
292885	138	CTG ...	LEQ ...	Ribo-seq	CTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, hES, LCL, MDA-MB-231
483431	66	ATG ...	MQL ...	Ribo-seq	ATG		5	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HEK293T, HeLa, HFF, MDA-MB-231
483433	81	CTG ...	LKW ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293T, MDA-MB-231
2723	30	CTG ...	LMT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES, MDA-MB-231
483436	87	ATG ...	MLL ...	Ribo-seq	ATG		6	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231
483442	114	TTG ...	LLR ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293T, MDA-MB-231
283466	63	CTG ...	LMM ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HeLa, LCL, MDA-MB-231
7766	102	GTG ...	VIF ...	Ribo-seq	GTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231
292890	147	ATG ...	MMS ...	Ribo-seq	ATG		8	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231
915690	36	GTA ...	VVG ...	Ribo-seq	GTA		1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
292888	144	ATG ...	MSL ...	Ribo-seq	ATG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, hES, LCL, MDA-MB-231
483438	99	TTG ...	LKS ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293T, HeLa, hES, MDA-MB-231
1723489	132	CTG ...	LRL ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
1723479	48	CTG ...	LQG ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, MDA-MB-231, MM1S, RPE-1
527098	60	ATG ...	MSA ...	Ribo-seq	ATG	weak	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, hES, MDA-MB-231, RPE-1, U2OS
292900	75	CTG ...	LSR ...	Ribo-seq	CTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231
2728	42	ATG ...	MEI ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1723517	45	ATG ...	MCL ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1723493	138	TTG ...	LLL ...	Ribo-seq	TTG	weak	3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
2726	54	ATG ...	MWI ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231
292882	114	GTG ...	VWF ...	Ribo-seq	GTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, hES, LCL, MDA-MB-231
1504697	81	TTG ...	LVK ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, hES, MDA-MB-231, RPE-1
1094455	66	TTG ...	LQM ...	Ribo-seq	TTG	weak	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, hES, MDA-MB-231, RPE-1

Export data