ORF 3313036 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

3313036

Chromosome

Strand

Start-stop positions

14457824-14498928

Nucleic length (bp)

2862

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MTA ...

Spliced: Yes

Exons

Exons start-end

14498928-14498838
14494439-14494210
14493811-14493642
14490679-14490565
14488584-14488492
14486504-14486367
14483151-14483032
14481097-14480990
14480905-14480759
14479714-14479569
14477015-14476919
14475945-14475785
14474615-14474495
14469563-14469336
14468860-14468681
14466426-14466282
14465030-14464911
14461331-14461186
14460297-14460208
14458687-14458532
14457883-14457824

Genome browsers

UCSC

Transcripts

1 known transcript

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2724	ENST00000439561	protein_coding	HGNC:2231	-	Ribo-seq			1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
3313037	UNKNOWN_TRANSCRIPT		OVERLAPPING_GENES_COPB1_to_PSMA1_chr11	-	Ribo-seq			1	Erhard2018		HFF

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