Transcript 2609 | MetamORF

Transcript

ID CARD

MetamORF ID

2609

ENST00000361367

Name

CTR9-201

Strand

Biotype

protein_coding

Start-end positions

10750987-10779743

CDS Start-stop positions

10751413-10779105

CDS Relative positions

Sequences

Transcript sequence

ACC ...

Genome browsers

UCSC

Gene

HGNC:16850

Aliases

CTR9,
ENSG00000198730, HGNC:16850, KIAA0155,
NCBI:9646, OFF:CTR9, p150TSP,
SH2BP1, TSBP

Chr 11

ORFs

58 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2688022	168	CTG ...	LKR ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative Overlapping sORF Upstream	MM1S, RPE-1
1723300	87	TTG ...	LCS ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
2611	42	GTG ...	VTK ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
1723298	102	TTG ...	LPH ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
283215	186	GTG ...	VQK ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, LCL, MDA-MB-231
2311280	30	ATG ...	MHL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
283205	33	TTG ...	LKL ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL
1723315	42	ATG ...	MWS ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
2311285	162	ATG ...	MSI ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1730186	99	ATG ...	MMK ...	Ribo-seq	ATG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
283219	93	GTG ...	VNS ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
406788	93	CTG ...	LTG ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative sORF Upstream	HCT116, Jurkat
1723296	141	ATG ...	MTK ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
904332	42	CAT ...	HVA ...	Ribo-seq	CAT	moderate	1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
409298	114	TTG ...	LTP ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative Overlapping sORF Upstream	HCT116, HEK293, Jurkat, MDA-MB-231, MM1S, RPE-1
2803592	102	CTG ...	LQA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative sORF Upstream	RPE-1
283201	39	ATG ...	MML ...	Ribo-seq	ATG	weak	4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, LCL
283240	114	ATG ...	MKT ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	InCDS Overlapping sORF	Blood, LCL, MDA-MB-231
283217	105	ATG ...	MRR ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
2324745	36	CTG ...	LLQ ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
1723302	117	GTG ...	VPF ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1723320	48	GTG ...	VIQ ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293
283246	60	ATG ...	MWH ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231
2547576	84	ATG ...	MAP ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
292139	141	TTG ...	LAT ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL, MDA-MB-231
1723304	102	ATG ...	MEQ ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
1730176	129	CTG ...	LIY ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1316067	117	ATG ...	MVP ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human Johnstone2016	Alternative sORF Upstream	Brain_tumor, HEK293, HeLa, HFF, RPE-1
2054949	51	ATG ...	MLP ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
7504	39	TTG ...	LLL ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HeLa, MDA-MB-231
1504478	78	ATG ...	MWP ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
283209	36	ATG ...	MWV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
2543418	69	ATG ...	MKQ ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
1730184	102	ATG ...	MMM ...	Ribo-seq	ATG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
2311302	69	TTG ...	LYS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2543420	57	ATG ...	MAP ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
904334	36	CCA ...	PSR ...	Ribo-seq	CCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1730182	105	CTG ...	LMM ...	Ribo-seq	CTG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
283211	30	GTG ...	VPS ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES, LCL, RPE-1
7502	51	TTG ...	LIW ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
481782	57	ATG ...	MHS ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1504473	36	ATG ...	MMQ ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
406790	60	TTG ...	LTP ...	Ribo-seq	TTG		13	sORFs_org_Human	Alternative Overlapping sORF Upstream	Blood, Flp-In_T-REx-293, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, Jurkat, MDA-MB-231, MM1S, RPE-1
2543412	78	CTG ...	LMM ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
2054951	48	CTG ...	LPQ ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
2543416	72	ATG ...	MMK ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
1730188	96	ATG ...	MKQ ...	Ribo-seq	ATG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293
283203	36	ATG ...	MLK ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL
2543414	75	ATG ...	MMM ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
283242	36	GTG ...	VAS ...	Ribo-seq	GTG	strong	6	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231
3015889	114	CTG ...	LKR ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	MM1S
283192	42	ATG ...	MAI ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1730179	153	ATG ...	MWS ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
2608	72	TTG ...	LVW ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231, RPE-1
3305635	3522	ATG ...	MSR ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
2311300	75	CTG ...	LKL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
283207	60	ATG ...	MFL ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
283199	48	ATG ...	MRG ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF

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