ORF 3305635 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

3305635

Chromosome

Strand

Start-stop positions

10751413-10779105

Nucleic length (bp)

3522

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MSR ...

Spliced: Yes

Exons

Exons start-end

10751413-10751457
10752672-10752770
10754958-10755197
10755678-10755795
10756749-10756838
10760173-10760321
10761947-10762054
10763431-10763538
10763643-10763879
10764112-10764201
10764308-10764436
10764548-10764731
10766402-10766490
10767806-10767991
10768074-10768161
10768343-10768491
10770210-10770326
10770487-10770632
10771545-10771616
10772520-10772655
10773127-10773273
10774012-10774169
10775207-10775303
10775521-10775633
10778679-10779105

Genome browsers

UCSC

Transcripts

1 known transcript

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3305630	UNKNOWN_TRANSCRIPT		HGNC:16850	-	Ribo-seq			1	Erhard2018		HFF
2609	ENST00000361367	protein_coding	HGNC:16850	-	Ribo-seq			1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF

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