Transcript 2536 | MetamORF

Transcript

ID CARD

MetamORF ID

2536

ENST00000379719

Name

IPO7-201

Strand

Biotype

protein_coding

Start-end positions

9384622-9448126

CDS Start-stop positions

9384764-9445194

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

HGNC:9852

Aliases

ENSG00000205339,
HGNC:9852, Imp7, IPO7,
NCBI:10527, OFF:IPO7, RANBP7

Chr 11

ORFs

66 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
105570	72	CTG ...	LSS ...	Ribo-seq	CTG		16	sORFs_org_Human	InCDS Overlapping sORF	Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
283004	81	ATG ...	MII ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
2557	51	TTG ...	LQL ...	Ribo-seq	TTG	moderate	14	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
1819275	75	CTG ...	LKA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
283019	60	GTG ...	VSC ...	Ribo-seq	GTG	moderate	23	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
105568	81	CTG ...	LIS ...	Ribo-seq	CTG		14	sORFs_org_Human	InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
1094338	39	GTG ...	VLL ...	Ribo-seq	GTG	weak	11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1
3199975	39	CTC ...	LWL ...	Ribo-seq	CTC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
2561	30	GTG ...	VCS ...	Ribo-seq	GTG	moderate	19	sORFs_org_Human	InCDS Overlapping sORF	Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1819271	45	GTG ...	VVS ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1049879	42	TTG ...	LAR ...	Ribo-seq	TTG		5	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa, MM1S, RPE-1
1007548	30	ATG ...	MYS ...	Ribo-seq	ATG	moderate	8	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, guo_2014, HEK293, HEK293T, HeLa, hES, HFF
1819265	33	CTG ...	LKL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
2535	45	ATG ...	MDR ...	Ribo-seq	ATG	strong	29	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Brain_tumor, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
2543358	42	TTG ...	LQE ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa
481769	111	TTG ...	LAL ...	Ribo-seq	TTG	strong	19	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1, U2OS
3199970	42	ACG ...	TVL ...	Ribo-seq	ACG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
105566	90	CTG ...	LTS ...	Ribo-seq	CTG		9	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, HFF, LCL, RPE-1
101024	48	CTG ...	LAM ...	Ribo-seq	CTG	strong	21	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
105564	39	ATG ...	MSI ...	Ribo-seq	ATG		14	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
1819281	69	TTG ...	LLC ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
3199961	63	ATA ...	IKI ...	Ribo-seq	ATA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
1825910	138	ATG ...	MLN ...	Ribo-seq	ATG		7	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, hES, HFF, RPE-1
1049881	45	GTG ...	VAL ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293
1130324	30	TTG ...	LIW ...	Ribo-seq	TTG	weak	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1
3199964	81	CAA ...	QVN ...	Ribo-seq	CAA	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
3201307	36	GGG ...	GLA ...	Ribo-seq	GGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
904184	84	ACT ...	TTT ...	Ribo-seq	ACT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
904196	48	ACT ...	TSN ...	Ribo-seq	ACT	weak	2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, Jurkat
1819279	72	TTG ...	LLL ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1819269	30	CTG ...	LVT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
3199968	63	GAT ...	DTP ...	Ribo-seq	GAT	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
3201309	42	GCA ...	ALT ...	Ribo-seq	GCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
2565	30	GTG ...	VVS ...	Ribo-seq	GTG	moderate	30	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
2553	78	GTG ...	VNF ...	Ribo-seq	GTG	weak	19	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
295797	135	TTG ...	LNQ ...	Ribo-seq	TTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, RPE-1
1209075	39	TTG ...	LTS ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1
2559	45	TTG ...	LQL ...	Ribo-seq	TTG	weak	14	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, Monocyte, RPE-1
3305527	3117	ATG ...	MDP ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
917175	105	TGT ...	CLN ...	Ribo-seq	TGT		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1819273	30	TTG ...	LLI ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
633837	45	TTG ...	LIQ ...	Ribo-seq	TTG	weak	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, THP-1
904198	30	AAG ...	KSI ...	Ribo-seq	AAG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1007551	54	GTG ...	VHS ...	Ribo-seq	GTG		5	sORFs_org_Human	InCDS Overlapping sORF	BJ, Flp-In_T-REx-293, guo_2014, HeLa
406748	33	TTT ...	FKD ...	Ribo-seq	TTT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
1819267	36	TTG ...	LYL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
904187	63	TCA ...	SVQ ...	Ribo-seq	TCA	strong	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
917179	78	ATC ...	ISL ...	Ribo-seq	ATC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
283024	54	GTG ...	VFS ...	Ribo-seq	GTG	weak	17	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, Flp-In_T-REx-293, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
1819277	42	TTG ...	LIP ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
904194	36	GGC ...	GSS ...	Ribo-seq	GGC	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat
481771	57	ATG ...	MCA ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative sORF Upstream	Brain_tumor, HEK293, HeLa, HFF
2555	36	GTG ...	VSA ...	Ribo-seq	GTG	weak	16	sORFs_org_Human	InCDS Overlapping sORF	Blood, Brain, Flp-In_T-REx-293, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
2551	30	ATG ...	MQS ...	Ribo-seq	ATG	moderate	13	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
1819283	66	TTG ...	LCF ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
2545	57	ATG ...	MEA ...	Ribo-seq	ATG	strong	24	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
3199972	30	AAG ...	KNK ...	Ribo-seq	AAG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
101026	42	ATG ...	MFP ...	Ribo-seq	ATG	moderate	19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
406746	39	AGA ...	RNF ...	Ribo-seq	AGA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
1819291	30	CTG ...	LLF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
105572	66	TTG ...	LKD ...	Ribo-seq	TTG		21	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2567	33	ATG ...	MKN ...	Ribo-seq	ATG	weak	25	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
283021	69	ATG ...	MTE ...	Ribo-seq	ATG	weak	17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
2563	45	CTG ...	LDR ...	Ribo-seq	CTG	moderate	19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
295799	96	ATG ...	MML ...	Ribo-seq	ATG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
1819285	30	CTG ...	LLA ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa

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