ORF 3305527 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

3305527

Chromosome

Strand

Start-stop positions

9384764-9445194

Nucleic length (bp)

3117

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MDP ...

Spliced: Yes

Exons

Exons start-end

9384764-9384847
9403290-9403371
9408486-9408639
9409928-9410086
9414255-9414411
9417059-9417148
9420411-9420505
9420614-9420698
9423006-9423140
9423777-9423876
9424914-9424990
9425146-9425262
9428540-9428629
9429031-9429196
9429674-9429834
9430875-9431003
9433570-9433636
9433721-9433846
9434934-9435031
9436271-9436366
9437754-9437974
9438080-9438285
9440455-9440661
9442081-9442197
9445097-9445194

Genome browsers

UCSC

Transcripts

1 known transcript

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3305516	UNKNOWN_TRANSCRIPT		HGNC:9852	-	Ribo-seq			1	Erhard2018		HFF
2536	ENST00000379719	protein_coding	HGNC:9852	-	Ribo-seq			1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF

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