Transcript 15111 | MetamORF

Transcript

ID CARD

MetamORF ID

15111

ENST00000647112

Name

Strand

Biotype

processed_transcript

Start-end positions

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

Genome browsers

Gene

HGNC:1919

Aliases

CHD4,
ENSG00000111642, HGNC:1919, Mi-2b,
Mi2-BETA, NCBI:1108, OFF:CHD4

Chr 12

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
15127	93	GTG ...	VRL ...	Ribo-seq	GTG		24	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
15129	162	CTG ...	LLS ...	Ribo-seq	CTG		25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
708452	234	TCC ...	SKE ...	Ribo-seq	TCC		2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
452067	54	CTG ...	LAN ...	Ribo-seq	CTG		18	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
15121	180	CTG ...	LKQ ...	Ribo-seq	CTG		24	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
708458	228	GAG ...	ESM ...	Ribo-seq	GAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
15125	159	CTG ...	LSD ...	Ribo-seq	CTG		25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
15123	258	TTG ...	LAE ...	Ribo-seq	TTG		25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
708456	282	ACC ...	TRF ...	Ribo-seq	ACC		1	sORFs_org_Human	ncRNA sORF	Jurkat
15113	138	GTG ...	VTR ...	Ribo-seq	GTG		25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
708450	240	CAC ...	HLS ...	Ribo-seq	CAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
708454	246	CAT ...	HQH ...	Ribo-seq	CAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
15117	192	CTG ...	LHK ...	Ribo-seq	CTG		26	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
708460	144	GCT ...	ADV ...	Ribo-seq	GCT		2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
15110	267	GTG ...	VEC ...	Ribo-seq	GTG		25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
708462	168	GAA ...	EEL ...	Ribo-seq	GAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
15119	237	CTG ...	LSK ...	Ribo-seq	CTG		25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
15115	171	CTG ...	LEE ...	Ribo-seq	CTG		25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS

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