Transcript 10592 | MetamORF

Transcript

ID CARD

MetamORF ID

10592

ENST00000612161

Name

SLC38A1-211

Strand

Biotype

protein_coding

Start-end positions

46196127-46239895

CDS Start-stop positions

46196127-46239800

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

HGNC:13447

Aliases

ATA1,
ENSG00000111371, HGNC:13447, NAT2,
NCBI:81539, OFF:SLC38A1, SAT1,
SLC38A1

Chr 12

ORFs

51 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
410711	42	ACA ...	TRV ...	Ribo-seq	ACA		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
1011073	30	GTG ...	VSL ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	guo_2014, hES
298921	66	GTG ...	VGF ...	Ribo-seq	GTG		10	sORFs_org_Human	InCDS Overlapping sORF	Blood, Brain, HEK293T, HeLa, hES, LCL, RPE-1, THP-1
298916	87	TTG ...	LNW ...	Ribo-seq	TTG	weak	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HeLa, LCL, RPE-1
920989	54	GTT ...	VCY ...	Ribo-seq	GTT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
10596	69	TTG ...	LHL ...	Ribo-seq	TTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, RPE-1
1300349	210	GTG ...	VLI ...	Ribo-seq	GTG		5	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293T, HeLa, hES, MDA-MB-231
10594	63	TTG ...	LFA ...	Ribo-seq	TTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, RPE-1
537306	45	CTG ...	LTR ...	Ribo-seq	CTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
640463	45	TTG ...	LPW ...	Ribo-seq	TTG		6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, THP-1
640466	33	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative sORF Upstream	THP-1
3327535	1512	ATG ...	MMH ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
640461	30	CTG ...	LES ...	Ribo-seq	CTG		3	sORFs_org_Human	InCDS Overlapping sORF	HEK293T, hES, THP-1
537310	63	GTG ...	VLI ...	Ribo-seq	GTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
2556907	63	ATG ...	MTT ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
921007	54	GCT ...	AVY ...	Ribo-seq	GCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1300347	195	ATG ...	MLT ...	Ribo-seq	ATG		5	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HEK293T, HeLa, HFF, MDA-MB-231
2344200	84	GTG ...	VSL ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
410713	51	CAA ...	QML ...	Ribo-seq	CAA		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, HEK293, Jurkat
307316	39	TTG ...	LEP ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293T, HeLa, LCL, MM1S
920987	42	CTT ...	LLD ...	Ribo-seq	CTT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
920993	81	GGT ...	GFK ...	Ribo-seq	GGT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
921005	30	CCT ...	PID ...	Ribo-seq	CCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2817441	81	GTG ...	VKV ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	RPE-1
410717	33	TGG ...	WER ...	Ribo-seq	TGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
10602	84	CTG ...	LVR ...	Ribo-seq	CTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1300343	216	CTG ...	LEL ...	Ribo-seq	CTG		4	sORFs_org_Human	InCDS Overlapping sORF	HEK293T, HeLa, hES, RPE-1
921003	81	GTA ...	VRG ...	Ribo-seq	GTA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
640458	39	CTG ...	LHC ...	Ribo-seq	CTG	weak	6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, THP-1
1321639	48	TTG ...	LVS ...	Ribo-seq	TTG	strong	1	sORFs_org_Human	sORF Upstream	HEK293
10598	75	TTG ...	LHL ...	Ribo-seq	TTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, RPE-1
644653	45	TTG ...	LPW ...	Ribo-seq	TTG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, THP-1
644655	66	GTG ...	VGF ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	THP-1
1741487	129	TTG ...	LHL ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231
10591	33	TTG ...	LPP ...	Ribo-seq	TTG	weak	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, MDA-MB-231, RPE-1, U2OS
298914	54	ATG ...	MEI ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL
412922	198	CAA ...	QML ...	Ribo-seq	CAA		2	sORFs_org_Human	InCDS Overlapping sORF	HCT116, HEK293
921009	105	CTT ...	LCP ...	Ribo-seq	CTT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1741495	87	CTG ...	LIV ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, RPE-1
537308	48	ATG ...	MLT ...	Ribo-seq	ATG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
1741483	117	TTG ...	LFA ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231
920999	39	CAT ...	HNS ...	Ribo-seq	CAT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1300341	144	ATG ...	MLY ...	Ribo-seq	ATG		4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293T, HeLa, MDA-MB-231
1741485	123	TTG ...	LHL ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231
2333390	48	ATG ...	MKS ...	Ribo-seq	ATG	weak	3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
298923	69	CTG ...	LIV ...	Ribo-seq	CTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
298925	42	ATG ...	MIT ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1
1300345	192	CTG ...	LTR ...	Ribo-seq	CTG		4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293T, HeLa, MDA-MB-231
644651	30	CTG ...	LES ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, THP-1
1443171	63	GTG ...	VKV ...	Ribo-seq	GTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1
10600	90	ATG ...	MLY ...	Ribo-seq	ATG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1

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