ORF 3327535 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

3327535

Chromosome

Strand

Start-stop positions

46196127-46239800

Nucleic length (bp)

1512

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MMH ...

Spliced: Yes

Exons

Exons start-end

46239800-46239679
46229639-46229564
46229268-46229153
46209127-46209054
46207621-46207529
46207236-46207155
46206162-46206080
46204590-46204532
46204417-46204301
46203089-46203010
46201198-46201098
46198743-46198625
46198060-46197919
46197817-46197720
46196276-46196127

Genome browsers

UCSC

Transcripts

1 known transcript

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
10592	ENST00000612161	protein_coding	HGNC:13447	-	Ribo-seq			1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
3327533	UNKNOWN_TRANSCRIPT		HGNC:13447	-	Ribo-seq			1	Erhard2018		HFF

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