Gene NCBI:22236 | MetamORF

Gene

ID CARD

NCBI:22236

Aliases

ENSMUSG00000090171
MGI:3576049, NCBI:22236, OFF:Ugt1a2
UDPGT 1-2, Ugt1, Ugt1a2

Chromosome

Transcripts

8 ORFs
1 known transcript
8 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

202847

ENSMUST00000049289

Ugt1a2-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
668107	39	ATG ...	MTS ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
716404	96	ATG ...	MLC ...	Ribo-seq	ATG	weak	1	Johnstone2016	Downstream Overlapping sORF	Glioma, Liver, MEF, MESC
337931	36	ATG ...	MPS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
29033	54	TTG ...	LAI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
739515	99	CTG ...	LMI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
852901	39	ATG ...	MAA ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
679444	105	ATG ...	MQW ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
732855	96	ATG ...	MIW ...	Ribo-seq	ATG		1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC

ORFs

8 ORFs
1 known transcript
8 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

337931

ATG...

MPS...

ATG

sORF
Alternative
InCDS
Overlapping
Downstream
NMD

3T3, Glioma, Liver,
MEF, MESC, Neutrophil,
BMDC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
642270	ENSMUST00000138182	Ugt1a10-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
2895508	ENSMUST00000113137	Ugt1a6b-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
2895478	ENSMUST00000113139	Ugt1a8-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
7950	ENSMUST00000126203	Ugt1a7c-203	nonsense_mediated_decay	Ribo-seq	moderate	1	Johnstone2016
1038125	ENSMUST00000014263	Ugt1a6a-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse Johnstone2016
1397708	ENSMUST00000073049	Ugt1a1-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
202847	ENSMUST00000049289	Ugt1a2-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse Johnstone2016
978362	ENSMUST00000097659	Ugt1a5-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
2895450	ENSMUST00000073772	Ugt1a9-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
584836	ENSMUST00000113142	Ugt1a10-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016

716404

ATG...

MLC...

ATG

Downstream
Overlapping
sORF
Alternative

Glioma, Liver, MEF,
MESC, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1038125	ENSMUST00000014263	Ugt1a6a-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
1397708	ENSMUST00000073049	Ugt1a1-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
202847	ENSMUST00000049289	Ugt1a2-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
2895450	ENSMUST00000073772	Ugt1a9-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
3036738	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
978362	ENSMUST00000097659	Ugt1a5-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse Johnstone2016
2895508	ENSMUST00000113137	Ugt1a6b-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
584836	ENSMUST00000113142	Ugt1a10-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse Johnstone2016
2895478	ENSMUST00000113139	Ugt1a8-201	protein_coding	Ribo-seq	weak	1	Johnstone2016

852901

ATG...

MAA...

ATG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD

Glioma, Liver, MEF,
MESC, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
584836	ENSMUST00000113142	Ugt1a10-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
21160	ENSMUST00000113139	Ugt1a8-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
7950	ENSMUST00000126203	Ugt1a7c-203	nonsense_mediated_decay	Ribo-seq	moderate	1	Johnstone2016
2895450	ENSMUST00000073772	Ugt1a9-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
1397708	ENSMUST00000073049	Ugt1a1-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
1038125	ENSMUST00000014263	Ugt1a6a-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
202847	ENSMUST00000049289	Ugt1a2-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
978362	ENSMUST00000097659	Ugt1a5-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse Johnstone2016
2895508	ENSMUST00000113137	Ugt1a6b-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016

668107

ATG...

MTS...

ATG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD

Glioma, Liver, MEF,
MESC, BMDC, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1038125	ENSMUST00000014263	Ugt1a6a-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
2895478	ENSMUST00000113139	Ugt1a8-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
202847	ENSMUST00000049289	Ugt1a2-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
7950	ENSMUST00000126203	Ugt1a7c-203	nonsense_mediated_decay	Ribo-seq	weak	1	Johnstone2016
2895508	ENSMUST00000113137	Ugt1a6b-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
1397708	ENSMUST00000073049	Ugt1a1-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
978362	ENSMUST00000097659	Ugt1a5-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
2895450	ENSMUST00000073772	Ugt1a9-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
584836	ENSMUST00000113142	Ugt1a10-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse Johnstone2016

679444

105

ATG...

MQW...

ATG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD

Glioma, Liver, MEF,
MESC, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1038125	ENSMUST00000014263	Ugt1a6a-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
1394466	ENSMUST00000150634	Ugt1a7c-204	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
3036738	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
21160	ENSMUST00000113139	Ugt1a8-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
2895450	ENSMUST00000073772	Ugt1a9-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
7950	ENSMUST00000126203	Ugt1a7c-203	nonsense_mediated_decay	Ribo-seq	moderate	1	Johnstone2016
1397708	ENSMUST00000073049	Ugt1a1-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
642270	ENSMUST00000138182	Ugt1a10-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
584836	ENSMUST00000113142	Ugt1a10-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
2895508	ENSMUST00000113137	Ugt1a6b-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
202847	ENSMUST00000049289	Ugt1a2-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
978362	ENSMUST00000097659	Ugt1a5-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse Johnstone2016

732855

ATG...

MIW...

ATG

InCDS
Overlapping
sORF
Alternative
Downstream
NMD

Glioma, Liver, MEF,
MESC, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1038125	ENSMUST00000014263	Ugt1a6a-201	protein_coding	Ribo-seq		1	Johnstone2016
2895450	ENSMUST00000073772	Ugt1a9-201	protein_coding	Ribo-seq		1	Johnstone2016
2895478	ENSMUST00000113139	Ugt1a8-201	protein_coding	Ribo-seq		1	Johnstone2016
3036738	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
2895508	ENSMUST00000113137	Ugt1a6b-201	protein_coding	Ribo-seq		1	Johnstone2016
7950	ENSMUST00000126203	Ugt1a7c-203	nonsense_mediated_decay	Ribo-seq		1	Johnstone2016
1397708	ENSMUST00000073049	Ugt1a1-201	protein_coding	Ribo-seq		1	Johnstone2016
202847	ENSMUST00000049289	Ugt1a2-201	protein_coding	Ribo-seq		1	Johnstone2016
978362	ENSMUST00000097659	Ugt1a5-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse Johnstone2016
584836	ENSMUST00000113142	Ugt1a10-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse Johnstone2016

29033

TTG...

LAI...

TTG

InCDS
Overlapping
sORF
Alternative

BMDC, Liver, Testis,
Neutrophil, 3T3, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
21160	ENSMUST00000113139	Ugt1a8-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
1038125	ENSMUST00000014263	Ugt1a6a-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
642270	ENSMUST00000138182	Ugt1a10-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
202847	ENSMUST00000049289	Ugt1a2-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
978362	ENSMUST00000097659	Ugt1a5-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
1394466	ENSMUST00000150634	Ugt1a7c-204	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

739515

CTG...

LMI...

CTG

InCDS
Overlapping
sORF
Alternative

BMDC, Liver, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
202847	ENSMUST00000049289	Ugt1a2-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
21160	ENSMUST00000113139	Ugt1a8-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
978362	ENSMUST00000097659	Ugt1a5-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
584836	ENSMUST00000113142	Ugt1a10-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

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