ORF 668107 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

668107

Chromosome

Strand

Start-stop positions

88218258-88218296

Nucleic length (bp)

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MTS ...

Spliced: No

Exons

Exons start-end

Genome browsers

UCSC

Transcripts

10 known transcripts

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1038125	ENSMUST00000014263	protein_coding	NCBI:94284	1526 - 1564	Ribo-seq	CCGCCCATGA	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
2895478	ENSMUST00000113139	protein_coding	ENSMUSG00000089675	1481 - 1519	Ribo-seq	CCGCCCATGA	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
202847	ENSMUST00000049289	protein_coding	NCBI:22236	1472 - 1510	Ribo-seq	CCGCCCATGA	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
7950	ENSMUST00000126203	nonsense_mediated_decay	NCBI:394432	674 - 712	Ribo-seq	CCGCCCATGA	weak	1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
2895508	ENSMUST00000113137	protein_coding	NCBI:394435	1510 - 1548	Ribo-seq	CCGCCCATGA	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
21160	ENSMUST00000113139	protein_coding	NCBI:613123	1481 - 1519	Ribo-seq	CCGCCCATGA	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver
1397708	ENSMUST00000073049	protein_coding	NCBI:394436	1485 - 1523	Ribo-seq	CCGCCCATGA	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
978362	ENSMUST00000097659	protein_coding	NCBI:394433	1464 - 1502	Ribo-seq	CCGCCCATGA	weak	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
2895450	ENSMUST00000073772	protein_coding	NCBI:394434	1451 - 1489	Ribo-seq	CCGCCCATGA	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
584836	ENSMUST00000113142	protein_coding	NCBI:394430	1498 - 1536	Ribo-seq	CCGCCCATGA	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC

Export data