Gene Gm45213 | MetamORF

Gene

ID CARD

Gm45213

Aliases

Gm45213

Chromosome

Transcripts

5 ORFs
1 known transcript
5 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

422888

ENSMUST00000206065

Gm45213-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
211317	57	ATG ...	MLL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	Spleen_B_cell
218328	60	TTG ...	LML ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	Spleen_B_cell
224973	36	ATG ...	MRS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	Spleen_B_cell
221345	51	TTG ...	LIF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF	Spleen_B_cell
214898	42	CTG ...	LTM ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	Spleen_B_cell

ORFs

5 ORFs
1 known transcript
5 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

211317

ATG...

MLL...

ATG

ncRNA
sORF
Alternative
InCDS
Overlapping
NMD
Intronic

E14, MEF, NSC,
v6-5, 3T3, Spleen_B_cell,
Brain, Glioma, Liver,
MESC, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4024	ENSMUST00000206409	Snrpa1-209	processed_transcript	Ribo-seq		6	sORFs_org_Mouse
219420	ENSMUST00000153609	Snrpa1-206	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
422888	ENSMUST00000206065	Gm45213-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
211318	ENSMUST00000123157	Snrpa1-202	processed_transcript	Ribo-seq	weak	1	sORFs_org_Mouse
1563667	ENSMUST00000032723	Snrpa1-201	nonsense_mediated_decay	Ribo-seq	weak	1	Johnstone2016
72285	ENSMUST00000139082	Snrpa1-204	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
877581	ENSMUST00000206150	Snrpa1-207	processed_transcript	Ribo-seq	weak	1	sORFs_org_Mouse
422315	ENSMUST00000206166	Snrpa1-208	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

221345

TTG...

LIF...

TTG

Alternative
InCDS
Overlapping
sORF
Intronic
ncRNA

3T3, B_cell, MEF,
Spleen_B_cell, E14, NSC,
v6-5, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
219420	ENSMUST00000153609	Snrpa1-206	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
72285	ENSMUST00000139082	Snrpa1-204	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
422888	ENSMUST00000206065	Gm45213-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
4024	ENSMUST00000206409	Snrpa1-209	processed_transcript	Ribo-seq		6	sORFs_org_Mouse
211318	ENSMUST00000123157	Snrpa1-202	processed_transcript	Ribo-seq	weak	1	sORFs_org_Mouse

224973

ATG...

MRS...

ATG

ncRNA
sORF
Alternative
InCDS
Overlapping
Intronic

E14, 3T3, Brain,
Spleen_B_cell, B_cell, Liver,
MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
422315	ENSMUST00000206166	Snrpa1-208	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
219420	ENSMUST00000153609	Snrpa1-206	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
211318	ENSMUST00000123157	Snrpa1-202	processed_transcript	Ribo-seq	moderate	1	sORFs_org_Mouse
422888	ENSMUST00000206065	Gm45213-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
72285	ENSMUST00000139082	Snrpa1-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
877581	ENSMUST00000206150	Snrpa1-207	processed_transcript	Ribo-seq	moderate	1	sORFs_org_Mouse
4024	ENSMUST00000206409	Snrpa1-209	processed_transcript	Ribo-seq		5	sORFs_org_Mouse

218328

TTG...

LML...

TTG

ncRNA
sORF
Alternative
InCDS
Overlapping
Intronic

Brain, 3T3, Spleen_B_cell,
B_cell, MEF, Liver,
E14, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
211318	ENSMUST00000123157	Snrpa1-202	processed_transcript	Ribo-seq	moderate	1	sORFs_org_Mouse
219420	ENSMUST00000153609	Snrpa1-206	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
422888	ENSMUST00000206065	Gm45213-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
72285	ENSMUST00000139082	Snrpa1-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
877581	ENSMUST00000206150	Snrpa1-207	processed_transcript	Ribo-seq	moderate	1	sORFs_org_Mouse
4024	ENSMUST00000206409	Snrpa1-209	processed_transcript	Ribo-seq		5	sORFs_org_Mouse

214898

CTG...

LTM...

CTG

ncRNA
sORF
Intronic
Alternative
InCDS
Overlapping

E14, MEF, v6-5,
B_cell, 3T3, Spleen_B_cell,
Brain, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4024	ENSMUST00000206409	Snrpa1-209	processed_transcript	Ribo-seq		5	sORFs_org_Mouse
72285	ENSMUST00000139082	Snrpa1-204	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
219420	ENSMUST00000153609	Snrpa1-206	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
422888	ENSMUST00000206065	Gm45213-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
211318	ENSMUST00000123157	Snrpa1-202	processed_transcript	Ribo-seq	weak	1	sORFs_org_Mouse
877581	ENSMUST00000206150	Snrpa1-207	processed_transcript	Ribo-seq	weak	1	sORFs_org_Mouse

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