Transcript 4024 | MetamORF

Transcript

ID CARD

MetamORF ID

4024

ENSMUST00000206409

Name

Snrpa1-209

Strand

Biotype

processed_transcript

Start-end positions

66060603-66074370

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:68981

Aliases

1500015N06Rik,
ENSMUSG00000030512, MGI:1916231, NCBI:68981,
OFF:Snrpa1, Snrpa1

Chr 7

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
589303	30	CTG ...	LQG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
211317	57	ATG ...	MLL ...	Ribo-seq	ATG		6	sORFs_org_Mouse	ncRNA sORF	E14, MEF, NSC, v6-5
72337	54	CTG ...	LTK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
73428	63	TTG ...	LLQ ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, v6-5
74333	48	TTG ...	LRR ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, v6-5
217846	54	CTG ...	LSD ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	E14, MEF, NSC, v6-5
4502	90	CTG ...	LAE ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, Skin_tumor, v6-5
841904	57	GTG ...	VSS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
76023	69	CTG ...	LTE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil
75341	66	CTG ...	LVC ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, v6-5
214898	42	CTG ...	LTM ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, v6-5
76859	51	TTG ...	LLR ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, v6-5
72968	39	CTG ...	LKT ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, v6-5
4023	42	ATG ...	MPY ...	Ribo-seq	ATG		6	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Skin_tumor, v6-5
76471	66	CTG ...	LDG ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, v6-5
75891	72	CTG ...	LKG ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, v6-5
72529	60	CTG ...	LQS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, v6-5
221345	51	TTG ...	LIF ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	E14, MEF, NSC, v6-5
72284	126	CTG ...	LGA ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, MEF, Neutrophil, NSC, v6-5
218328	60	TTG ...	LML ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, v6-5
75413	69	GTG ...	VLV ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, v6-5
72894	108	TTG ...	LPT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
422314	33	GTG ...	VRD ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil
224973	36	ATG ...	MRS ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, v6-5
978073	33	CTG ...	LDF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF

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