Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

14163 1 + 139060303 - 139060332 1 30

CTG ...

LDS ...

14166 19 - 37328952 - 37329068 1 117

CTG ...

LEV ...

14168 19 + 9000802 - 9000867 1 66

CTG ...

LSL ...

14170 1 - 86353117 - 86353179 1 63

CTG ...

LER ...

14172 19 - 37313969 - 37314085 1 117

TTG ...

LNI ...

14174 19 - 6907978 - 6908010 1 33

CTG ...

LGH ...

14176 19 - 37309828 - 37309863 1 36

CTG ...

LNI ...

14178 19 - 37280722 - 37280796 1 75

CTG ...

LQI ...

14180 19 + 9013376 - 9013408 1 33

ATG ...

MLI ...

14182 19 - 60763143 - 60763256 1 114

GTG ...

VAG ...

14184 19 - 20377669 - 20377740 1 72

ATG ...

MLC ...

14186 1 + 45327605 - 45327646 1 42

CTG ...

LDD ...

14188 1 + 63177776 - 63177880 1 105

GTG ...

VAV ...

14190 19 - 6906846 - 6906923 1 78

GTG ...

VKA ...

14192 19 - 20375320 - 20375355 1 36

CTG ...

LHR ...

14194 19 - 37309784 - 37309831 1 48

TTG ...

LID ...

14196 19 - 6907895 - 6908116 1 222

GTG ...

VGD ...

14198 1 + 93787706 - 93787759 1 54

CTG ...

LER ...

14201 19 - 5347989 - 5348033 1 45

TTG ...

LSS ...

14204 19 + 8824985 - 8825074 1 90

TTG ...

LCR ...

14206 19 - 46378600 - 46378644 1 45

CTG ...

LHP ...

14208 19 - 37280581 - 37280709 1 129

CTG ...

LRH ...

14211 19 - 5560197 - 5560259 1 63

GTG ...

VQE ...

14213 19 - 4915042 - 4915071 1 30

GTG ...

VLS ...

14215 19 - 37328977 - 37329183 1 207

CTG ...

LSD ...

14217 19 + 8831241 - 8831336 1 96

ATG ...

MID ...

14219 19 - 37284123 - 37284272 1 150

GTG ...

VVF ...

14221 19 + 29956962 - 29957021 1 60

CTG ...

LAA ...

14224 19 - 6906846 - 6906908 1 63

GTG ...

VEP ...

14226 19 - 6907538 - 6907579 1 42

TTG ...

LKS ...

14228 19 - 20380334 - 20380417 1 84

CTG ...

LKR ...

14230 19 + 8824430 - 8824522 1 93

TTG ...

LTE ...

14232 19 - 20382778 - 20382936 1 159

CTG ...

LEE ...

14234 19 + 4098533 - 4098565 1 33

TTG ...

LAE ...

14237 19 - 60768704 - 60768733 1 30

TTG ...

LVM ...

14239 19 - 37317973 - 37318218 1 246

ATG ...

MSG ...

14241 19 - 37312074 - 37312160 1 87

TTG ...

LNA ...

14243 19 - 4913769 - 4913804 1 36

CTG ...

LPW ...

14245 19 - 20377664 - 20377717 1 54

CTG ...

LFP ...

14247 19 - 37328952 - 37329044 1 93

GTG ...

VEN ...

14249 19 + 34109603 - 34109635 1 33

TTG ...

LQR ...

14252 19 + 47734870 - 47734932 1 63

GTG ...

VVS ...

14254 19 + 9010469 - 9010525 1 57

TTG ...

LIS ...

14256 19 - 37328952 - 37329077 1 126

GTG ...

VNM ...

14258 19 + 47620840 - 47620893 1 54

ATG ...

MTP ...

14260 19 + 6365695 - 6365796 1 102

ATG ...

MEP ...

14262 19 - 6907062 - 6907097 1 36

GTG ...

VSL ...

14264 19 - 5104829 - 5104927 1 99

ATG ...

MTL ...

14266 19 - 42124842 - 42124913 1 72

CTG ...

LSW ...

14268 19 - 37309784 - 37309852 1 69

TTG ...

LEE ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5