Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3400312
Chromosome
1
Strand
+
Start-stop positions
32143006-32170894
Nucleic length (bp)
1626
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MKS ...
Spliced: Yes
Exons
14
Exons start-end
32143006-32143024
32154588-32154721
32156853-32156945
32157346-32157445
32158267-32158361
32159400-32159531
32160615-32160703
32161947-32162046
32162361-32162524
32163235-32163313
32166105-32166230
32167169-32167296
32169882-32170060
32170707-32170894
Genome browsers
ID
Aliases
ENSG00000025800
FLJ11249,
HGNC:6399,
IPOA7
KPNA6,
KPNA7,
MGC17918
NCBI:23633,
OFF:KPNA6
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3400307 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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