Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3300964
Chromosome
10
Strand
+
Start-stop positions
120851421-120908713
Nucleic length (bp)
3675
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MLP ...
Spliced: Yes
Exons
29
Exons start-end
120851421-120851506
120852524-120852635
120858643-120858796
120860109-120860282
120862735-120862921
120865047-120865212
120865630-120865744
120866569-120866764
120867066-120867169
120871170-120871346
120873839-120873923
120878353-120878459
120880826-120880901
120883780-120883888
120885814-120885938
120886689-120886836
120889078-120889184
120889895-120890009
120890716-120890887
120900029-120900137
120901036-120901098
120902257-120902322
120903055-120903232
120904047-120904142
120904646-120904811
120905319-120905416
120905876-120906021
120906776-120906855
120908556-120908713
Genome browsers
ID
Aliases
BRWD2
DR11,
ENSG00000120008,
FLJ10506
HGNC:13831,
HH14,
KIAA1351
NCBI:55717,
OFF:WDR11,
SRI1
WDR11,
WDR15
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3300959 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
Export data