Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3299542
Chromosome
10
Strand
+
Start-stop positions
73746833-73770546
Nucleic length (bp)
3129
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MNV ...
Spliced: Yes
Exons
20
Exons start-end
73746833-73747004
73751108-73751243
73759622-73759794
73760018-73760386
73760713-73760849
73763490-73763601
73763856-73763983
73765451-73765589
73765800-73765915
73766086-73766210
73766350-73766541
73766760-73766853
73767054-73767170
73767837-73768007
73768810-73768906
73769007-73769152
73769347-73769485
73769615-73769733
73769836-73770015
73770280-73770546
Genome browsers
ID
Aliases
ENSG00000176986
HGNC:10705,
KIAA0079,
NCBI:9632
OFF:SEC24C,
SEC24C
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3299537 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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