Transcript 7003 | MetamORF

Transcript

ID CARD

MetamORF ID

7003

ENSMUST00000082418

Name

mt-Nd5-201

Strand

Biotype

protein_coding

Start-end positions

11742-13565

CDS Start-stop positions

11742-13565

CDS Relative positions

1-1824

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

mt-Nd5

Aliases

mt-Nd5

Chr MT

ORFs

36 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1590409	36	CTG ...	LAL ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
417772	138	ATC ...	IST ...	Ribo-seq	ATC	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, C2C12, E14
88147	57	CTG ...	LQP ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis
925812	75	ATC ...	IFP ...	Ribo-seq	ATC	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
885591	66	ATG ...	MIN ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Neutrophil, NSC
440556	114	ATG ...	MTT ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Liver, Spleen_B_cell
275043	96	CTG ...	LRR ...	Ribo-seq	CTG	weak	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, C2C12, E14, Liver, MEF, R1E
925759	69	ATC ...	IHI ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
417796	87	ATC ...	ICS ...	Ribo-seq	ATC	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, C2C12, E14
417802	78	ACG ...	TDE ...	Ribo-seq	ACG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12, E14
417766	156	ATT ...	IPD ...	Ribo-seq	ATT	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, C2C12, E14
88131	93	TTG ...	LSH ...	Ribo-seq	TTG	weak	14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, C2C12, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis
925772	78	ATA ...	IKQ ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
7002	90	TTG ...	LDD ...	Ribo-seq	TTG	moderate	14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis
1590411	30	CTG ...	LSH ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
88145	222	ATG ...	MRT ...	Ribo-seq	ATG	weak	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, Testis
417825	159	ATT ...	INR ...	Ribo-seq	ATT	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12, E14
1076295	42	ATG ...	MIY ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil
1753407	33	TTG ...	LAS ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
925783	63	ATT ...	IHP ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
925786	114	ATT ...	IST ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
417841	264	ATT ...	IHF ...	Ribo-seq	ATT	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12, E14
1276187	51	ATT ...	ILF ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
764600	39	TTG ...	LAE ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
925751	90	AGG ...	RGG ...	Ribo-seq	AGG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
925767	66	ACG ...	TQI ...	Ribo-seq	ACG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
417806	144	AGG ...	RKI ...	Ribo-seq	AGG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, C2C12, E14
1276203	63	ATC ...	INY ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
764592	54	ATG ...	MVR ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Liver, MEF, v6-5
275034	87	CTG ...	LVR ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, C2C12, Liver, R1E
990374	33	CTG ...	LTF ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
88163	246	TTG ...	LIF ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, Spleen_B_cell, Testis
1276174	57	ATT ...	INL ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
417815	105	ATC ...	ISN ...	Ribo-seq	ATC	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, C2C12
417792	168	ATA ...	ISY ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12
764618	57	ATG ...	MMV ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Liver, MEF

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