Transcript 1118 | MetamORF

Transcript

ID CARD

MetamORF ID

1118

ENSMUST00000058754

Name

Zmpste24-201

Strand

Biotype

protein_coding

Start-end positions

121059237-121098241

CDS Start-stop positions

121060996-121097999

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

NCBI:230709

Aliases

A530043O15Rik,
D030046F19, ENSMUSG00000043207, Face-1,
FACE1, MADB, MGI:1890508,
NCBI:230709, OFF:Zmpste24, STE24,
Ste24p, Zmpste24

Chr 4

ORFs

57 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
156965	33	TTG ...	LGR ...	Ribo-seq	TTG	strong	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, NSC
554561	90	TTG ...	LSP ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1231085	57	AAG ...	KLM ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
155024	57	TTG ...	LVE ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, v6-5
545021	216	GTG ...	VGR ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, MEF, Neutrophil
545631	225	GTG ...	VRK ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil
551211	78	ATG ...	MLT ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC, v6-5
157026	48	CTG ...	LTG ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, NSC
509543	48	CTG ...	LAW ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
554922	246	TTG ...	LMV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
1117	63	ATG ...	MRR ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Brain, E14, Glioma, Liver, MEF, MESC, Skin_tumor
547899	66	TTG ...	LPL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
556822	69	TTG ...	LKD ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, NSC
148876	36	CTG ...	LAV ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, v6-5
150823	66	TTG ...	LNF ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Neutrophil, NSC
147537	45	TTG ...	LEV ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF
558202	75	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
555316	72	TTG ...	LLK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Neutrophil
1556368	72	CTG ...	LPF ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
546250	39	GTG ...	VTT ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF
148209	30	CTG ...	LPN ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, v6-5
512381	72	CTG ...	LRR ...	Ribo-seq	CTG	weak	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Liver, MEF, NSC, Spleen_B_cell, v6-5
1380085	45	ATG ...	MYF ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
1654932	78	CTG ...	LCL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
548795	147	GTG ...	VTL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Neutrophil
548759	180	TTG ...	LKS ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil
512345	66	CTG ...	LAL ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Liver, Neutrophil, Spleen_B_cell
545295	54	TTG ...	LTN ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, v6-5
1230780	69	ATA ...	ITW ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
149917	105	GTG ...	VGL ...	Ribo-seq	GTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, Spleen_B_cell
1177249	39	TTG ...	LPP ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
1229806	120	ATC ...	IGG ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
556347	222	TTG ...	LCL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
555720	75	ATG ...	MLL ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC, Neutrophil, v6-5
146707	30	ATG ...	MKV ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
509691	45	GTG ...	VSL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Spleen_B_cell
152270	45	TTG ...	LPR ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, NSC
150441	54	CTG ...	LMR ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, Neutrophil, NSC
545859	75	CTG ...	LTI ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
148472	51	ATG ...	MRL ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC, Neutrophil, NSC
154123	30	TTG ...	LVF ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, v6-5
513723	54	CTG ...	LDG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Spleen_B_cell
1178003	66	GTG ...	VFF ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
146895	126	GTG ...	VGI ...	Ribo-seq	GTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Spleen_B_cell
1266	84	TTG ...	LRN ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, Skin_tumor, Spleen_B_cell
513304	75	GTG ...	VTP ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Liver, Neutrophil, Spleen_B_cell
898766	54	AGG ...	RES ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
1230967	36	ATT ...	ILS ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
156297	78	CTG ...	LYQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
546760	108	CTG ...	LKK ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Neutrophil
556459	243	ATG ...	MVS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
553972	138	CTG ...	LAK ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Neutrophil
545749	129	CTG ...	LRE ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, Neutrophil
509733	39	CTG ...	LRH ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Spleen_B_cell
552751	39	TTG ...	LGD ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Liver
898885	192	ATA ...	ISR ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
512227	33	GTG ...	VHA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Spleen_B_cell

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