Transcript 42206 | MetamORF

Transcript

ID CARD

MetamORF ID

42206

ENSMUST00000050092

Name

Zfp518a-201

Strand

Biotype

protein_coding

Start-end positions

40894705-40917947

CDS Start-stop positions

40911629-40916065

CDS Relative positions

522-4958

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

NCBI:72672

Aliases

2810401C22Rik,
6330417C12Rik, AI426493, ENSMUSG00000049164,
MGI:1919922, mKIAA0335, NCBI:72672,
OFF:Zfp518a, Zfp518, Zfp518a,
Znf518, Znf518a

Chr 19

ORFs

37 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
43720	33	ATG ...	MLA ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	E14, Glioma, Liver, MEF, MESC, Testis, v6-5
43678	30	CTG ...	LAP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	E14, Testis
1158087	63	TTG ...	LCE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1203241	51	TTG ...	LCA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF Upstream	E14
1868043	63	CTG ...	LDS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	R1E
42205	42	CTG ...	LAP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
1160342	69	CTG ...	LYL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	v6-5
1160533	57	GTG ...	VGG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	v6-5
1160799	198	CTG ...	LGL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	v6-5
1160054	156	TTG ...	LIT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF Upstream	v6-5
1159604	84	TTG ...	LIL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF Upstream	v6-5
410958	30	ATG ...	MGT ...	Ribo-seq	ATG		8	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, E14, MEF, Neutrophil, R1E, v6-5
1158041	81	TTG ...	LFQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1157864	51	CTG ...	LDS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	v6-5
1158953	48	CTG ...	LRN ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1158302	57	GTG ...	VGG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	E14, v6-5
1158874	33	TTG ...	LMV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF Upstream	v6-5
1869659	42	TTG ...	LII ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
1159746	90	ATG ...	MPS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1869252	72	GTG ...	VLK ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
1634601	42	ATG ...	MDK ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1159972	63	CTG ...	LIV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	v6-5
1205529	216	AGG ...	RGN ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1867797	63	ATG ...	MSR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, R1E
1157722	33	ATG ...	MLD ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	E14, Glioma, Liver, MEF, MESC, v6-5
1160308	111	TTG ...	LCA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF Upstream	v6-5
1869588	72	CTG ...	LRI ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	R1E
1157330	36	CTG ...	LTV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1204358	102	CTG ...	LIF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	E14
1158744	30	ATG ...	MVF ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	sORF Upstream	E14, Glioma, Liver, MEF, MESC, v6-5
1869566	69	CTG ...	LKM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
1157531	45	TTG ...	LLR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1202727	45	ATG ...	MLA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1160225	72	GTG ...	VCL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	v6-5
1158189	69	CTG ...	LYL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	E14, v6-5
1158607	63	CTG ...	LIV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	v6-5
1867943	48	TTG ...	LDL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E

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