Transcript 6653 | MetamORF

Transcript

ID CARD

MetamORF ID

6653

ENSMUST00000215908

Name

Zfp266-205

Strand

Biotype

protein_coding

Start-end positions

20500375-20521266

CDS Start-stop positions

-20505085

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:77519

Aliases

5330440G10Rik,
5730601F06Rik, AW552317, ENSMUSG00000060510,
MGI:1924769, NCBI:77519, OFF:Zfp266,
Zfp266

Chr 9

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1270185	153	ATT ...	ILG ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	E14
1269842	78	ATT ...	IGI ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	sORF	E14
440169	105	CTG ...	LFG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Spleen_B_cell
254413	72	ATG ...	MPT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	MEF
439768	135	CTG ...	LHF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	E14, Spleen_B_cell
263963	93	GTG ...	VSF ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	MEF
273402	138	TTG ...	LAE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	MEF, v6-5
267367	66	TTG ...	LRR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF	E14, Spleen_B_cell
260687	48	ATG ...	MWL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF	Brain, MEF
261595	42	CTG ...	LWS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	Brain, MEF
621543	63	TTG ...	LTI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	v6-5
433581	69	CTG ...	LHF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	E14, MEF, Spleen_B_cell
417663	177	ATT ...	ILG ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	E14
1270914	54	ATT ...	IFH ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	sORF	E14
621311	39	CTG ...	LFG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	MEF
255254	51	ATG ...	MMW ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	sORF	Brain, MEF
267682	78	CTG ...	LLM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	MEF
438823	54	TTG ...	LDR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	E14, Spleen_B_cell
1268399	114	TTG ...	LAE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	E14
6652	84	GTG ...	VDF ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	MEF, Skin_tumor, v6-5
1274784	108	ATT ...	ILF ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	E14
921618	42	ATT ...	ILF ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	E14
417155	63	CTG ...	LYR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	E14
439560	120	TTG ...	LDR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	E14, Spleen_B_cell

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