Transcript 19658 | MetamORF

Transcript

ID CARD

MetamORF ID

19658

ENSMUST00000188489

Name

Zfp207-208

Strand

Biotype

protein_coding

Start-end positions

80383279-80405733

CDS Start-stop positions

80383455-80395550

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:22680

Aliases

8430401D15Rik,
BuGZ, ENSMUSG00000017421, MGI:1340045,
NCBI:22680, OFF:Zfp207, Zep,
Zfp207, Znf207

Chr 11

ORFs

34 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
24019	270	CTG ...	LRD ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, MEF, Testis
22400	213	TTG ...	LFF ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Testis
774394	189	TTG ...	LVW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
933805	177	TTG ...	LGF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
935675	111	AGG ...	RLF ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
447906	162	CTG ...	LMG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	MEF
297813	39	ATG ...	MQY ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
319004	171	CTG ...	LFC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
21441	213	CTG ...	LVA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Testis
419068	93	TTG ...	LMM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
936846	156	AGG ...	RLF ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
19657	198	GTG ...	VEN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Testis
935192	117	AAG ...	KHR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
22899	258	CTG ...	LVA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Testis
317474	54	CTG ...	LDC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
20512	66	ATG ...	MDR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
448785	159	ATG ...	MGG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF Upstream	MEF
1295564	42	ATC ...	IRE ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
451004	123	TTG ...	LCL ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	sORF Upstream	BMDC, MEF
770618	186	GTG ...	VWR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
23174	255	GTG ...	VAV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Testis
419596	174	CTG ...	LRV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, MEF
1294259	234	ATC ...	ICS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
23835	243	GTG ...	VEN ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Testis
450775	135	GTG ...	VSA ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	sORF Upstream	BMDC, MEF
931916	69	ATA ...	IHS ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
936566	162	AAG ...	KHR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
450974	117	CTG ...	LFP ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	sORF Upstream	BMDC, MEF
452109	87	ATG ...	MRR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
933839	108	ATC ...	IKA ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
22574	222	TTG ...	LGF ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, MEF, Testis
772199	222	GTG ...	VSV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
21653	147	TTG ...	LFF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, MEF
310659	90	ATG ...	MMR ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF

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