Transcript 656531

Transcript

ID CARD

MetamORF ID

656531

ENSMUST00000165565

Name

Zfp207-206

Strand

Biotype

protein_coding

Start-end positions

80383279-80396245

CDS Start-stop positions

80383455-80395550

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:22680

Aliases

8430401D15Rik,
BuGZ, ENSMUSG00000017421, MGI:1340045,
NCBI:22680, OFF:Zfp207, Zep,
Zfp207, Znf207

Chr 11

ORFs

72 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
21362	108	CTG ...	LFQ ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Neutrophil, NSC, v6-5
22574	222	TTG ...	LGF ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
1131064	87	CTG ...	LHQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
91233	30	GTG ...	VGL ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
19657	198	GTG ...	VEN ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, MEF, NSC
446215	129	ATG ...	MNL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, NSC
450552	147	CTG ...	LMN ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, NSC, v6-5
1288329	126	ATT ...	ILC ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
448785	159	ATG ...	MGG ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF Upstream	MEF, v6-5
451004	123	TTG ...	LCL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF Upstream	MEF, v6-5
1596531	267	GTG ...	VEI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
770618	186	GTG ...	VWR ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, MEF, NSC, v6-5
419596	174	CTG ...	LRV ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, E14, MEF, NSC, v6-5
1291219	141	ACG ...	TRV ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
1289291	60	ACG ...	TSW ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1289565	126	CTG ...	LFC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, MEF
656530	87	CTG ...	LHL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, NSC, v6-5
447457	123	CTG ...	LQP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, NSC
319004	171	CTG ...	LFC ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, E14, MEF, Neutrophil, NSC, v6-5
452351	144	ATG ...	MNM ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, NSC, v6-5
23835	243	GTG ...	VEN ...	Ribo-seq	GTG		11	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
448080	36	TTG ...	LVI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
23174	255	GTG ...	VAV ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, Brain, MEF, Neutrophil, NSC, R1E, v6-5
448145	153	ATG ...	MIL ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, NSC, v6-5
310659	90	ATG ...	MMR ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, v6-5
931916	69	ATA ...	IHS ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
452175	84	CTG ...	LAL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, NSC
22400	213	TTG ...	LFF ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
450775	135	GTG ...	VSA ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	sORF Upstream	MEF, v6-5
1286160	45	AGG ...	RTA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1598453	168	TTG ...	LFF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
1293845	228	AGG ...	RPA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Downstream Overlapping sORF	E14
1597094	225	CTG ...	LRD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
772221	39	CTG ...	LLH ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, v6-5
19447	30	CTG ...	LFH ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
1292603	39	ATT ...	IPC ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1290814	84	ATA ...	IDH ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1295148	96	ATA ...	IDH ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
20512	66	ATG ...	MDR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
452109	87	ATG ...	MRR ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, v6-5
446538	138	ATG ...	MMM ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, NSC, v6-5
446632	54	CTG ...	LLH ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, NSC, v6-5
22899	258	CTG ...	LVA ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, Brain, MEF, Neutrophil, NSC, R1E, v6-5
935950	120	ATC ...	ICS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
18214	117	GTG ...	VVI ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
453910	135	ATG ...	MMM ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, NSC, v6-5
1342417	66	CTG ...	LLH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1127608	210	GTG ...	VAV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, v6-5
933805	177	TTG ...	LGF ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, MEF
21441	213	CTG ...	LVA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, v6-5
21653	147	TTG ...	LFF ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, E14, MEF, NSC, v6-5
419068	93	TTG ...	LMM ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, v6-5
935675	111	AGG ...	RLF ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1295175	123	AGG ...	RLF ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
644482	75	CTG ...	LLI ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
1294141	129	AAG ...	KHR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
777922	120	CTG ...	LFQ ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, NSC, v6-5
20473	120	ATG ...	MVV ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
935192	117	AAG ...	KHR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
774394	189	TTG ...	LVW ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, MEF, NSC, v6-5
450974	117	CTG ...	LFP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF Upstream	MEF, v6-5
772199	222	GTG ...	VSV ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, MEF, NSC, v6-5
449074	132	ATG ...	MMN ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, NSC, v6-5
1291705	123	ATA ...	IVL ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
297813	39	ATG ...	MQY ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
447906	162	CTG ...	LMG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	MEF, v6-5
448173	75	CTG ...	LHQ ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Neutrophil, NSC, v6-5
647896	114	CTG ...	LQQ ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, v6-5
452625	93	CTG ...	LFN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, NSC
24019	270	CTG ...	LRD ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, MEF, Neutrophil, NSC, R1E, v6-5
300682	39	CTG ...	LSK ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1286634	45	AGG ...	RQL ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14

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