Transcript 8497 | MetamORF

Transcript

ID CARD

MetamORF ID

8497

ENSMUST00000153038

Name

Ywhae-204

Strand

Biotype

retained_intron

Start-end positions

75732961-75757116

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:22627

Aliases

AU019196,
ENSMUSG00000020849, MGI:894689, NCBI:22627,
OFF:Ywhae, Ywhae

Chr 11

ORFs

34 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
419396	75	CTG ...	LDV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	C2C12, Liver
1293002	117	ATT ...	IEQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
307699	66	CTG ...	LDK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, Liver
305147	138	GTG ...	VFF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Liver
419109	225	GTG ...	VYQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	C2C12
419440	210	CTG ...	LAE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	C2C12, MEF
1288801	129	ATA ...	IIS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14
1284402	228	CTG ...	LVY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
1291498	96	AAG ...	KLI ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
8966	159	GTG ...	VIG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Liver, Skin_tumor
931894	192	AGG ...	RPS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
418907	225	AGG ...	RIW ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Intronic sORF	C2C12, E14
419328	234	ATG ...	MIG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	C2C12
20151	132	ATG ...	MYW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	E14
1289697	231	AAG ...	KKV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
298804	135	GTG ...	VAY ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, Liver
419324	210	AGG ...	RRS ...	Ribo-seq	AGG		3	sORFs_org_Mouse	Intronic sORF	C2C12, E14, MEF
975330	258	CTG ...	LPE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, MEF
1285199	213	AAG ...	KLA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1284807	195	AGG ...	RYL ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1290187	51	ATT ...	IPA ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
975404	246	CTG ...	LPQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
9001	39	ATG ...	MFS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
8496	204	CTG ...	LTV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	E14, Liver, Skin_tumor
975232	222	ATC ...	IWC ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	MEF
446718	189	CTG ...	LAE ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, Liver
419166	78	ATT ...	ILD ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	C2C12
935579	54	ATC ...	IRF ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
1288235	231	ATC ...	IGR ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
8971	210	GTG ...	VEL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Liver, Skin_tumor
91560	84	CTG ...	LSL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
1291546	156	ATT ...	IGA ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
8799	243	GTG ...	VES ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Liver, Skin_tumor
1287077	108	AAG ...	KEE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14

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