Transcript 96056 | MetamORF

Transcript

ID CARD

MetamORF ID

96056

ENSMUST00000131288

Name

Ywhab-202

Strand

Biotype

protein_coding

Start-end positions

163995503-164015283

CDS Start-stop positions

164011605-

CDS Relative positions

Sequences

Transcript sequence

TTC ...

Genome browsers

UCSC

Gene

NCBI:54401

Aliases

1300003C17Rik,
14-3-3b, ENSMUSG00000018326, MGI:1891917,
NCBI:54401, OFF:Ywhab, Ywhab

Chr 2

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
16550	201	GTG ...	VPA ...	Ribo-seq	GTG		7	sORFs_org_Mouse	sORF	3T3, B_cell, Brain, Liver, MEF, R1E
14939	33	CTG ...	LSA ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	sORF	3T3, B_cell, Brain, R1E
1213916	39	AGG ...	RRS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
964092	60	AAG ...	KST ...	Ribo-seq	AAG		2	sORFs_org_Mouse	sORF	BMDC, E14
47495	69	GTG ...	VSW ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, R1E
1207064	42	AAG ...	KQS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	sORF	E14
964492	63	AGG ...	RDT ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	sORF	BMDC
968764	75	ATA ...	IRV ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	sORF	BMDC
16122	45	CTG ...	LAC ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	sORF	3T3, B_cell, Liver, R1E
969676	36	AGG ...	RLS ...	Ribo-seq	AGG	moderate	2	sORFs_org_Mouse	sORF	BMDC, E14
48967	39	TTG ...	LHP ...	Ribo-seq	TTG		5	sORFs_org_Mouse	sORF	BMDC, Brain, Liver, R1E
48494	45	ATG ...	MKR ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	sORF	3T3, Brain, MEF
964873	57	ACG ...	TNS ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	sORF	BMDC
964425	78	AGG ...	RLT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	BMDC
15809	51	GTG ...	VRR ...	Ribo-seq	GTG		8	sORFs_org_Mouse	sORF	3T3, B_cell, Brain, Liver, MEF, R1E
15716	120	GTG ...	VSS ...	Ribo-seq	GTG		8	sORFs_org_Mouse	sORF	3T3, B_cell, Brain, Liver, MEF, R1E
964862	63	AGG ...	RCP ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	sORF	BMDC
966284	54	AAG ...	KPN ...	Ribo-seq	AAG	moderate	2	sORFs_org_Mouse	sORF	BMDC, E14
15382	42	CTG ...	LSR ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E
16128	84	ATG ...	MRR ...	Ribo-seq	ATG		7	sORFs_org_Mouse	sORF	3T3, B_cell, Brain, Liver, MEF, R1E
15213	141	GTG ...	VPA ...	Ribo-seq	GTG		7	sORFs_org_Mouse	sORF	3T3, B_cell, Brain, Liver, MEF, R1E
48727	36	ATG ...	MPP ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	sORF	3T3, Brain
46802	45	CTG ...	LKL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	sORF	B_cell, Brain, E14, Liver, R1E
965389	33	ATC ...	IYS ...	Ribo-seq	ATC	moderate	2	sORFs_org_Mouse	sORF	BMDC, E14
976661	165	AAG ...	KKE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	MEF

Export data