Transcript 907600

Transcript

ID CARD

MetamORF ID

907600

ENSMUST00000205035

Name

Ybx3-205

Strand

Biotype

processed_transcript

Start-end positions

131365090-131378241

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TAT ...

Genome browsers

UCSC

Gene

NCBI:56449

Aliases

Csda,
dbpA, Dpba, ENSMUSG00000030189,
MGI:2137670, MSY3, MSY4,
NCBI:56449, OFF:Ybx3, oxyR,
Yb2, Ybx3

Chr 6

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1316915	276	GTG ...	VVF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14, R1E
70741	156	CTG ...	LPL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, R1E
69885	105	ATG ...	MVQ ...	Ribo-seq	ATG		6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, R1E
70051	156	CTG ...	LPQ ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, R1E, v6-5
908476	30	ACG ...	TLF ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1021366	192	CTG ...	LFP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, R1E
70472	144	TTG ...	LER ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, R1E
1739868	39	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
907599	63	AAG ...	KAG ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	ncRNA sORF	BMDC
909537	108	ATC ...	IGI ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1514833	33	TTG ...	LPF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
70345	165	TTG ...	LSP ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, MEF, R1E, v6-5
1023072	129	CTG ...	LRR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, R1E, v6-5
1094134	78	GTG ...	VKH ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, R1E, v6-5
1093868	66	CTG ...	LRT ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
1316811	231	ATG ...	MFL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	E14, R1E
68065	171	CTG ...	LLA ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, R1E
70553	48	TTG ...	LTV ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, NSC, R1E
70406	150	CTG ...	LLL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, R1E
68637	147	ATG ...	MGS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, R1E, v6-5
67696	78	GTG ...	VDS ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, R1E
1809090	66	ATG ...	MTI ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	R1E
68760	135	CTG ...	LKT ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, R1E
68753	207	CTG ...	LGR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, R1E, v6-5
70620	87	CTG ...	LPA ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, R1E
1023007	72	GTG ...	VGQ ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, NSC, R1E, v6-5
1315672	102	TTG ...	LLC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	E14, R1E
67870	135	CTG ...	LGP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, R1E
68890	174	GTG ...	VKD ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, R1E, v6-5

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