Transcript 3025 | MetamORF

Transcript

ID CARD

MetamORF ID

3025

ENSMUST00000032309

Name

Ybx3-201

Strand

Biotype

protein_coding

Start-end positions

131364855-131388438

CDS Start-stop positions

131367798-131388255

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

NCBI:56449

Aliases

Csda,
dbpA, Dpba, ENSMUSG00000030189,
MGI:2137670, MSY3, MSY4,
NCBI:56449, OFF:Ybx3, oxyR,
Yb2, Ybx3

Chr 6

ORFs

66 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
977905	198	AAG ...	KRL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
68343	57	ATG ...	MAG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Testis
71234	153	CTG ...	LGP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, NSC, Testis, v6-5
67882	48	TTG ...	LAL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
71341	162	GTG ...	VDS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain, E14
68753	207	CTG ...	LGR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Testis
70472	144	TTG ...	LER ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14
68201	93	ATG ...	MLL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
71618	171	CTG ...	LPA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain, E14
71253	249	ATG ...	MFL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Testis
1249544	84	AGG ...	RTR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
3024	141	ATG ...	MES ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Skin_tumor
70051	156	CTG ...	LPQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Testis
1248759	81	ACG ...	TRR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
68955	87	CTG ...	LTG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
70406	150	CTG ...	LLL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14
71124	276	CTG ...	LFP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain
1247296	114	AAG ...	KRL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
70741	156	CTG ...	LPL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14
1247478	129	AGG ...	REH ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
71635	66	TTG ...	LTV ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, NSC, Testis
71604	246	GTG ...	VDL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Testis
71909	174	CTG ...	LPQ ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, NSC, Testis, v6-5
70345	165	TTG ...	LSP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Testis
70553	48	TTG ...	LTV ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, Testis
71701	219	CTG ...	LKT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain
67870	135	CTG ...	LGP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Testis
68637	147	ATG ...	MGS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Testis
71035	189	ATG ...	MVQ ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain, E14
1249936	210	AAG ...	KKT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
69885	105	ATG ...	MVQ ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14
1248774	219	AGG ...	RRR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
526684	30	GTG ...	VPG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Overlapping sORF Upstream	E14
70966	258	ATG ...	MAG ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Testis
1245974	54	AAG ...	KSL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
68890	174	GTG ...	VKD ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Testis
71691	228	TTG ...	LER ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain, E14
71593	288	CTG ...	LTG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Testis
71318	291	CTG ...	LLT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Testis
68760	135	CTG ...	LKT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
71703	225	CTG ...	LGR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Testis, v6-5
71781	165	ATG ...	MGS ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, NSC, Testis, v6-5
1247059	201	AGG ...	RRR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1243206	54	ATA ...	IGA ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
71628	192	GTG ...	VKD ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, Testis, v6-5
71526	240	CTG ...	LPL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain, E14
1248264	132	AAG ...	KTK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
69055	42	CTG ...	LSN ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
71027	231	ATT ...	ITL ...	Ribo-seq	ATT		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Testis, v6-5
1248937	138	ATA ...	IGA ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
3087	36	ATG ...	MTP ...	Ribo-seq	ATG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, R1E, Skin_tumor
1244733	126	AAG ...	KKT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
71895	294	GTG ...	VVF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
71128	255	CTG ...	LLA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain, E14
67696	78	GTG ...	VDS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14
1245184	48	ACG ...	TQV ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
585422	294	ATG ...	MLL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14
529779	96	ATG ...	MTP ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, R1E
71722	234	CTG ...	LLL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain, E14
68065	171	CTG ...	LLA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14
910852	114	ACG ...	TLF ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
70620	87	CTG ...	LPA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14
1247519	144	AGG ...	RME ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1249570	216	AAG ...	KTK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
69502	90	CTG ...	LLT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
71751	183	TTG ...	LSP ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, NSC, Testis, v6-5

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