Transcript 9061 | MetamORF

Transcript

ID CARD

MetamORF ID

9061

ENSMUST00000063084

Name

Xbp1-201

Strand

Biotype

protein_coding

Start-end positions

5520659-5525893

CDS Start-stop positions

5520995-5524904

CDS Relative positions

Sequences

Transcript sequence

ACT ...

Genome browsers

UCSC

Gene

NCBI:22433

Aliases

D11Ertd39e,
ENSMUSG00000020484, MGI:98970, NCBI:22433,
OFF:Xbp1, TREB-5, TREB5,
XBP-1, Xbp1

Chr 11

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1395968	81	ATG ...	MSS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Downstream sORF	Liver, R1E
933668	36	ATA ...	IHQ ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
292069	177	CTG ...	LLS ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Downstream sORF	Brain, Liver, MEF, Neutrophil, R1E
9060	30	CTG ...	LLE ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, R1E, Skin_tumor
311939	156	CTG ...	LRP ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Downstream sORF	Brain, Liver, MEF, Neutrophil, R1E
1595964	105	GTG ...	VDM ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
1601271	111	GTG ...	VTV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
1037139	231	GTG ...	VKK ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Downstream sORF	Liver, MEF, Neutrophil, R1E
934507	30	ACG ...	TLG ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
889586	66	GTG ...	VHL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
935368	54	ATC ...	ISF ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
450893	294	GTG ...	VKI ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Downstream sORF	Liver, MEF, Neutrophil, R1E, Spleen_B_cell
453580	111	ATG ...	MCT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
447981	300	GTG ...	VVV ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Downstream sORF	Liver, MEF, Neutrophil, R1E, Spleen_B_cell
933550	36	ATC ...	ILT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
935186	54	ATG ...	MDS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Liver, MEF
888891	93	CTG ...	LLS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
447558	120	CTG ...	LAS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Spleen_B_cell
1599787	42	TTG ...	LSE ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative Downstream sORF	MEF
933663	30	ACG ...	TAL ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1037397	216	TTG ...	LED ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Downstream sORF	Liver, Neutrophil, R1E
1079480	138	CTG ...	LLD ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Downstream sORF	Liver, MEF, Neutrophil, R1E
296806	192	CTG ...	LGI ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Downstream sORF	Brain, Liver, MEF, Neutrophil, R1E
890675	90	CTG ...	LSP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver
1037805	135	CTG ...	LDA ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Downstream sORF	Liver, MEF, Neutrophil, R1E

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