Transcript 1036740

Transcript

ID CARD

MetamORF ID

1036740

ENSMUST00000131818

Name

Wsb1-202

Strand

Biotype

nonsense_mediated_decay

Start-end positions

79240276-79248659

CDS Start-stop positions

79243552-

CDS Relative positions

Sequences

Transcript sequence

TCT ...

Genome browsers

UCSC

Gene

NCBI:78889

Aliases

1110056B13Rik,
2700038M07Rik, ENSMUSG00000017677, MGI:1926139,
NCBI:78889, OFF:Wsb1, Wsb1

Chr 11

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1124515	105	TTG ...	LFR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	MEF, v6-5
650926	75	GTG ...	VMS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	NMD sORF	E14, v6-5
1036871	159	TTG ...	LVD ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	MEF, v6-5
450709	36	ATG ...	MVP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	NMD sORF	E14
1124905	114	ATG ...	MLL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	MEF, v6-5
451141	63	GTG ...	VRA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	MEF, Neutrophil, v6-5
450168	108	GTG ...	VRF ...	Ribo-seq	GTG		6	sORFs_org_Mouse	NMD sORF	BMDC, MEF, Neutrophil, v6-5
305294	81	TTG ...	LLA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	NMD sORF	MEF, Neutrophil, v6-5
446540	39	GTG ...	VCM ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	NMD sORF	Brain
1123806	117	TTG ...	LRA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	MEF, v6-5
641331	57	GTG ...	VHS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	MEF
450206	33	CTG ...	LHV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	MEF, Neutrophil, v6-5
447847	54	GTG ...	VSF ...	Ribo-seq	GTG		4	sORFs_org_Mouse	NMD sORF	BMDC, MEF, Neutrophil, v6-5
19827	246	TTG ...	LAR ...	Ribo-seq	TTG		4	sORFs_org_Mouse	NMD sORF	E14, MEF, v6-5
454069	48	ATG ...	MTL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	NMD sORF	Brain
644634	126	GTG ...	VKV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	MEF, v6-5
1127630	96	GTG ...	VYS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	v6-5
650393	144	GTG ...	VYF ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	NMD sORF	E14, MEF, v6-5
304167	135	CTG ...	LEG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	MEF, Neutrophil, v6-5
447947	114	CTG ...	LFP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	MEF, Neutrophil, v6-5
448859	60	TTG ...	LSN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	BMDC, MEF
447105	54	CTG ...	LES ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	NMD sORF	MEF
1126798	132	ATG ...	MAS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	MEF, v6-5
1126423	123	CTG ...	LTR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	MEF, v6-5
451007	57	TTG ...	LSG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	NMD sORF	v6-5
22023	288	TTG ...	LHG ...	Ribo-seq	TTG		4	sORFs_org_Mouse	NMD sORF	E14, MEF, v6-5
648447	48	CTG ...	LPV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	NMD sORF	v6-5
450936	57	CTG ...	LHP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	NMD sORF	Brain
450733	69	CTG ...	LWR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	NMD sORF	MEF
454050	51	GTG ...	VYV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	Brain, MEF, v6-5

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