Transcript 575520

Transcript

ID CARD

MetamORF ID

575520

ENSMUST00000203030

Name

Wnk1-224

Strand

Biotype

protein_coding

Start-end positions

119924621-120037659

CDS Start-stop positions

119926370-120037632

CDS Relative positions

Sequences

Transcript sequence

CGC ...

Genome browsers

UCSC

Gene

NCBI:232341

Aliases

6430573H23Rik,
EG406236, ENSMUSG00000045962, Hsn2,
MGI:2442092, mKIAA0344, NCBI:232341,
OFF:Wnk1, Prkwnk1, Wnk1

Chr 6

ORFs

73 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
909510	186	ATC ...	IPQ ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
580283	228	CTG ...	LCL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
577719	159	TTG ...	LLT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
585006	186	ATG ...	MSQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
576105	84	CTG ...	LAQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
527037	36	TTG ...	LFD ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
196691	210	GTG ...	VVA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
198211	222	GTG ...	VEV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
587121	66	GTG ...	VTR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
584972	87	ATG ...	MSV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
193776	39	CTG ...	LEQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
201485	96	TTG ...	LTS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC
587390	114	CTG ...	LEQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
583795	81	CTG ...	LFL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
585054	138	CTG ...	LGF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
581619	63	TTG ...	LLP ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
580486	108	ATG ...	MNN ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
199827	39	ATG ...	MQD ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
584824	72	CTG ...	LRV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
580959	123	CTG ...	LFP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
202859	216	GTG ...	VAV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
583519	63	GTG ...	VTR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
586936	108	GTG ...	VTT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
586502	159	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
205615	207	GTG ...	VAP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
583127	42	CTG ...	LRT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
205840	69	CTG ...	LRV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
585471	162	CTG ...	LVL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
580906	102	ATG ...	MSR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
578593	141	CTG ...	LLL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC
206664	168	ATG ...	MIS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
575647	114	ATG ...	MVP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
195925	159	ATG ...	MIS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
579039	54	CTG ...	LFQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
577531	138	TTG ...	LLM ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
585483	276	ATG ...	MSR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
575678	84	ATG ...	MSV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
907722	45	ATC ...	IHT ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
576033	63	TTG ...	LNL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
578002	90	GTG ...	VRM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
907873	183	AGG ...	RIG ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
199147	297	ATG ...	MAQ ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC
908263	249	ATC ...	ICY ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
581585	123	CTG ...	LYS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
194641	117	ATG ...	MMP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
586413	51	CTG ...	LLQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
585336	258	CTG ...	LAQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
582292	126	CTG ...	LLY ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
585509	297	CTG ...	LFP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
581735	78	GTG ...	VWS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
910132	132	CTG ...	LRC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
907339	213	GTG ...	VSP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
209272	138	ATG ...	MKL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
909298	45	ATC ...	ISL ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
579573	246	GTG ...	VVS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
586787	93	GTG ...	VRM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
205626	69	ATG ...	MKL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
203249	48	GTG ...	VIT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
585674	204	ATG ...	MGC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
196305	54	GTG ...	VKV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
581294	222	CTG ...	LSH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
580379	132	ATG ...	MCL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
580993	231	CTG ...	LVR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
530613	57	CTG ...	LFH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
908427	222	GTG ...	VEL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
584994	288	ATG ...	MVP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
584828	201	ATG ...	MAQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
584553	153	CTG ...	LGT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
585742	81	GTG ...	VWS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
204767	114	ATG ...	MPR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
202233	234	TTG ...	LAG ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
584840	213	TTG ...	LFS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
200189	117	ATG ...	MTV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3

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