Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

67540

ID

ENSMUST00000177761

Name

Wnk1-223

Strand

-

Biotype

protein_coding

Start-end positions

119923971-120038655

CDS Start-stop positions

119926370-120037632

CDS Relative positions

-

Sequences

Transcript sequence

AAA ...

Gene

ID

NCBI:232341

Aliases

6430573H23Rik,
EG406236, ENSMUSG00000045962, Hsn2,
MGI:2442092, mKIAA0344, NCBI:232341,
OFF:Wnk1, Prkwnk1, Wnk1


Chr 6

ORFs

140 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

530613 57

CTG ...

LFH ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Spleen_B_cell, v6-5
575647 114

ATG ...

MVP ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
527672 30

GTG ...

VHI ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
1315872 66

TTG ...

LAL ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, NSC
1514824 117

TTG ...

LLQ ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
204697 36

GTG ...

VSS ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
199827 39

ATG ...

MQD ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
194641 117

ATG ...

MMP ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14
208789 105

TTG ...

LTS ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
v6-5
208047 219

GTG ...

VVA ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, v6-5
838569 51

CTG ...

LKW ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
587390 114

CTG ...

LEQ ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
NSC
3094 51

CTG ...

LVL ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
1242853 165

GTG ...

VEW ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
E14, NSC
579573 246

GTG ...

VVS ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
200543 54

CTG ...

LQW ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
580379 132

ATG ...

MCL ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
576033 63

TTG ...

LNL ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
208775 51

GTG ...

VTY ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
580283 228

CTG ...

LCL ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
205615 207

GTG ...

VAP ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
202783 33

ATG ...

MYQ ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell, v6-5
583519 63

GTG ...

VTR ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Neutrophil
1095890 168

TTG ...

LHL ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
1095503 144

TTG ...

LLI ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
1516454 114

CTG ...

LRQ ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
NSC
528509 90

ATG ...

MLL ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell, v6-5
1515296 48

CTG ...

LKK ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
583795 81

CTG ...

LFL ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
NSC
204134 45

CTG ...

LYP ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
203747 48

TTG ...

LTW ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, Spleen_B_cell, v6-5
1515974 75

GTG ...

VPF ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
196691 210

GTG ...

VVA ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
1094553 42

ATG ...

MLI ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
70646 39

CTG ...

LVW ...

Ribo-seq
CTG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
1096835 162

TTG ...

LRR ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
194409 30

ATG ...

MSP ...

Ribo-seq
ATG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, Neutrophil,
Spleen_B_cell
3083 69

GTG ...

VTT ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
1093263 165

TTG ...

LCA ...

Ribo-seq
TTG weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
1093934 69

TTG ...

LRW ...

Ribo-seq
TTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
579779 42

GTG ...

VVQ ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
587121 66

GTG ...

VTR ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Neutrophil, v6-5
67745 255

CTG ...

LPP ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Testis
1317372 222

CTG ...

LVR ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
528750 57

CTG ...

LQD ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, BMDC
199147 297

ATG ...

MAQ ...

Ribo-seq
ATG strong 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Spleen_B_cell
528494 99

TTG ...

LMF ...

Ribo-seq
TTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell, v6-5
67923 135

GTG ...

VAP ...

Ribo-seq
GTG moderate 3 sORFs_org_Mouse
    sORF
    Upstream
BMDC, E14, Testis
576904 75

CTG ...

LPH ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, NSC
200189 117

ATG ...

MTV ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
195925 159

ATG ...

MIS ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
1314156 300

GTG ...

VCS ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
E14, NSC
1515812 81

GTG ...

VMV ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
1095135 48

CTG ...

LGI ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
70549 51

CTG ...

LFL ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, v6-5
1514144 51

GTG ...

VEQ ...

Ribo-seq
GTG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
580486 108

ATG ...

MNN ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
204767 114

ATG ...

MPR ...

Ribo-seq
ATG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, C2C12, E14
528459 84

TTG ...

LGC ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell, v6-5
202859 216

GTG ...

VAV ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
70610 267

CTG ...

LCP ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Testis
68274 276

GTG ...

VTA ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Testis
198812 36

CTG ...

LFH ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
209272 138

ATG ...

MKL ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
68586 60

CTG ...

LPQ ...

Ribo-seq
CTG weak 4 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, MEF, Testis,
v6-5
209375 231

GTG ...

VEV ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
525119 108

ATG ...

MNP ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
198211 222

GTG ...

VEV ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
1514413 66

CTG ...

LRL ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
1514638 30

CTG ...

LEL ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
1094312 72

CTG ...

LEQ ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
837015 45

CTG ...

LGF ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
580959 123

CTG ...

LFP ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
205840 69

CTG ...

LRV ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Neutrophil
581294 222

CTG ...

LSH ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1314446 90

CTG ...

LEH ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, NSC
585054 138

CTG ...

LGF ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
201485 96

TTG ...

LTS ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
69474 216

GTG ...

VPP ...

Ribo-seq
GTG moderate 3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, Spleen_B_cell, Testis
67591 165

ATG ...

MDA ...

Ribo-seq
ATG strong 4 sORFs_org_Mouse
    sORF
    Upstream
3T3, BMDC, E14,
Testis
207333 87

CTG ...

LKV ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, NSC
524994 30

CTG ...

LLL ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
907339 213

GTG ...

VSP ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
E14, NSC
1315621 96

CTG ...

LKD ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1515085 87

ATG ...

MVF ...

Ribo-seq
ATG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
205626 69

ATG ...

MKL ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell, v6-5
527037 36

TTG ...

LFD ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, Spleen_B_cell
67539 126

TTG ...

LGR ...

Ribo-seq
TTG moderate 6 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, BMDC, E14,
MEF, Spleen_B_cell, Testis
1092511 36

ATG ...

MLS ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
204334 39

CTG ...

LIP ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
585742 81

GTG ...

VWS ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Neutrophil
210635 129

TTG ...

LSF ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Spleen_B_cell
2767 33

CTG ...

LSH ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Spleen_B_cell
839323 123

CTG ...

LKN ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
NSC
580906 102

ATG ...

MSR ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
192192 36

GTG ...

VTM ...

Ribo-seq
GTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, Spleen_B_cell
1094841 30

TTG ...

LFI ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
199018 63

CTG ...

LNF ...

Ribo-seq
CTG moderate 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
525479 96

ATG ...

MFM ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell, v6-5
578593 141

CTG ...

LLL ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1671143 42

CTG ...

LWK ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
208266 126

ATG ...

MTV ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
v6-5
1314100 63

ATG ...

MPK ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
581585 123

CTG ...

LYS ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
579862 42

GTG ...

VAL ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
577719 159

TTG ...

LLT ...

Ribo-seq
TTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
526728 54

ATG ...

MEP ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
527125 48

CTG ...

LLG ...

Ribo-seq
CTG weak 3 sORFs_org_Mouse
    sORF
    Upstream
MEF, Spleen_B_cell, v6-5
70480 78

ATG ...

MTA ...

Ribo-seq
ATG weak 8 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, BMDC, Brain,
E14, MEF, Spleen_B_cell,
Testis, v6-5
581735 78

GTG ...

VWS ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Neutrophil
584824 72

CTG ...

LRV ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
210268 225

GTG ...

VAV ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
582292 126

CTG ...

LLY ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
69747 216

CTG ...

LAR ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Spleen_B_cell, Testis
3106 42

CTG ...

LAQ ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
69620 87

CTG ...

LLL ...

Ribo-seq
CTG moderate 7 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, BMDC, Brain,
MEF, Spleen_B_cell, Testis,
v6-5
1317784 57

TTG ...

LKD ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, NSC
69839 144

CTG ...

LPP ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Spleen_B_cell, Testis
1314970 42

CTG ...

LLH ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
210180 93

CTG ...

LYL ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, NSC
209262 216

GTG ...

VAP ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, v6-5
526453 51

CTG ...

LEW ...

Ribo-seq
CTG strong 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, Spleen_B_cell
1514773 60

CTG ...

LHC ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
584972 87

ATG ...

MSV ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
1246871 45

GTG ...

VNT ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC
68129 99

CTG ...

LRR ...

Ribo-seq
CTG weak 4 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, BMDC, Spleen_B_cell,
Testis
529938 66

CTG ...

LCC ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
527103 57

CTG ...

LME ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
1314718 45

GTG ...

VFK ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
3034 63

CTG ...

LGP ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, NSC
1092566 63

CTG ...

LCL ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
70897 63

CTG ...

LLP ...

Ribo-seq
CTG weak 4 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, MEF, Testis,
v6-5
586787 93

GTG ...

VRM ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
206664 168

ATG ...

MIS ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
v6-5
1314331 63

CTG ...

LRL ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1317844 213

GTG ...

VEL ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
530264 117

TTG ...

LTW ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
577531 138

TTG ...

LLM ...

Ribo-seq
TTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
576105 84

CTG ...

LAQ ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
198913 60

TTG ...

LSF ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell, v6-5

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5