Transcript 45436 | MetamORF

Transcript

ID CARD

MetamORF ID

45436

ENSMUST00000143737

Name

Wdr75-204

Strand

Biotype

processed_transcript

Start-end positions

45801989-45823515

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGT ...

Genome browsers

UCSC

Gene

NCBI:73674

Aliases

1300003A18Rik,
2410118I19Rik, C77608, ENSMUSG00000025995,
MGI:1920924, NCBI:73674, OFF:Wdr75,
Wdr75

Chr 1

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
24411	75	TTG ...	LNG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
686061	81	CTG ...	LPL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1202522	126	AGG ...	RSI ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1306952	33	ACG ...	TTW ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	E14
652292	69	CTG ...	LAR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
1308132	66	AAG ...	KPG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
45974	225	CTG ...	LPK ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, MEF, R1E, Spleen_B_cell, Testis
45852	237	GTG ...	VSV ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, Testis
45435	231	GTG ...	VKL ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, Liver, MEF, R1E, Spleen_B_cell, Testis
1192673	54	ATT ...	ICS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
1199929	93	AAG ...	KLN ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
321907	51	CTG ...	LEL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1202698	120	AAG ...	KAA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1287578	156	AGG ...	RNF ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
388274	72	GTG ...	VIR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1232006	30	AGG ...	RRF ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
32090	96	CTG ...	LAV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
46639	240	CTG ...	LVS ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, Testis
114416	201	GTG ...	VEA ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, R1E, Spleen_B_cell
28106	72	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1228959	33	AAG ...	KRN ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
592790	63	ATG ...	MES ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
144985	174	TTG ...	LDY ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, R1E, Spleen_B_cell
1184226	42	ATT ...	IGT ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14

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