Transcript 36987 | MetamORF

Transcript

ID CARD

MetamORF ID

36987

ENSMUST00000026833

Name

Wdr24-201

Strand

Biotype

protein_coding

Start-end positions

25823627-25828730

CDS Start-stop positions

25824206-25828583

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:268933

Aliases

BC037651,
ENSMUSG00000025737, MGI:2446285, NCBI:268933,
OFF:Wdr24, Wdr24

Chr 17

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
384205	69	CTG ...	LMD ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, MEF, v6-5
705192	75	CTG ...	LAC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	3T3
380150	30	GTG ...	VNL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	sORF Upstream	Brain, MEF, v6-5
381240	48	CTG ...	LTN ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Liver, MEF, v6-5
1153073	33	CTG ...	LCR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	v6-5
1359760	30	ATG ...	MAD ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse Johnstone2016	sORF Upstream	E14, Glioma, Liver, MEF, MESC
1191085	153	ATG ...	MNS ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative sORF Upstream	Glioma, Liver, MEF, MESC
382967	36	ATG ...	MNV ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse Johnstone2016	sORF Upstream	Brain, Glioma, Liver, MEF, MESC, v6-5
387690	66	ATG ...	MDH ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	Brain, Glioma, Liver, MEF, MESC, v6-5
380776	54	ATG ...	MVL ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	Brain, Glioma, Liver, MEF, MESC
1627068	45	CTG ...	LAD ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
388455	51	GTG ...	VLT ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Liver, MEF
1627667	33	CTG ...	LEN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
38300	120	GTG ...	VRR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Testis
703961	60	GTG ...	VQL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF
703402	48	GTG ...	VLS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, v6-5
36986	129	ATG ...	MTG ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	3T3, Glioma, Liver, MEF, MESC, Testis

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